Updated on 2024/02/15

写真a

 
MURAKAMI Hiroshi
 
Organization
Faculty of Science and Engineering Professor
Other responsible organization
Biological Sciences Course of Graduate School of Science and Engineering, Master's Program
Biological Sciences Course of Graduate School of Science and Engineering, Doctoral Program
Contact information
The inquiry by e-mail is 《here
External link

Degree

  • 博士(農学) ( 東京大学 )

  • 修士(農学) ( 東京大学 )

Research History

  • 2013.4 -  

    Chuo University Professor

  • 2013.4 -  

    ~ 中央大学理工学部 教授

  • 2013.4 -  

    - Chuo University Professor

  • 2011.4 - 2013.3

    Saitama University Associate professor   Graduate School of Science and Engineering

  • 2001.4 - 2007.3

    名古屋市立大学医学部生化学第二講座 助教授

  • 2000.4 - 2001.3

    Impeiral Cancer Research Fund

  • 1997.4 - 2000.3

    Impeiral Cancer Research Fund

  • 1994.5 - 2000.3

    東京大学医学部生化学第一講座 助手

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Professional Memberships

  • 日本分子生物学会

  • Yeast genetic society of Japan

  • 日本分子生物学学会

  • Yeast genetic society of Japan

  • The molecular biology society of Japan

Research Interests

  • 減数分裂

  • 分化

  • 遺伝子発現

  • 細胞周期

  • "Cell cycle, gene expression, differentiation, meiosis"

  • meiosis

  • differentiation

  • gene expression

  • Cell cycle

Research Areas

  • Life Science / Molecular biology  / 分子生物学

Papers

  • Maintenance of meiotic crossover against reduced double-strand break formation in fission yeast lacking histone H2A.Z Reviewed

    Takatomi Yamada, Shintaro Yamada, Da-Qiao Ding, Yurika Fujita, Emi Takaya, Yasushi Hiraoka, Hiroshi Murakami, Kunihiro Ohta

    GENE   743   2020.6

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER  

    Meiotic crossover (CO) recombination initiates from programmed DNA double-strand breaks (DSBs) around hotspots, and results in reciprocal exchange of chromosome segments between homologous chromosomes (homologs). COs are crucial for most sexually-reproducing organisms because they promote accurate chromosome segregation and create genetic diversity. Therefore, faithful accomplishment of CO formation is ensured in many ways, but the bases of the regulation are not fully understood. Our previous study using fission yeast has revealed that mutants lacking the conserved histone H2A.Z are defective in DSB formation but maintain CO frequency at three loci tested. Here, we tested five additional sites to show that mutants lacking H2A.Z exhibit normal and increased CO frequency at two and three loci, respectively. Examining one of the CO-increased intervals in the mutant revealed that the CO upregulation is mediated at least partly at a recombination intermediate level. In addition, our genetic as well as genome-wide analyses implied a possibility that, even without H2A.Z, COs are maintained by weak and non-hotspot DSBs, which are processed preferentially as CO. These observations provide clues to further our understanding on CO control.

    DOI: 10.1016/j.gene.2020.144615

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  • Pulsed-Field Gel Electrophoresis for Detecting Chromosomal DNA Breakage in Fission Yeast. Reviewed International journal

    Takatomi Yamada, Hiroshi Murakami, Kunihiro Ohta

    Methods in molecular biology (Clifton, N.J.)   2119   135 - 143   2020

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    Language:English   Publishing type:Research paper (scientific journal)  

    DNA-strand breaks influence structure and function of chromosomes in diverse ways, and it is essential to analyze the lesions to understand behaviors of genetic information. For researchers in a wide array of fields including recombination, repair, and DNA damage response, efficient and easy detection of DNA breaks is of paramount importance. Among several procedures suitable for this purpose, a method to directly observe broken chromosomes by pulsed-field gel electrophoresis, using the fission yeast Schizosaccharomyces pombe as a model organism, is described in this chapter. Because S. pombe chromosomes are megabase-size, careful attention should be paid to maintain DNA as intact as possible. The protocol includes induction of DNA breaks, preparation of chromosomes, and separation of chromosomal DNA by PFGE. This procedure can be applicable to other species as well as other experiments handling large-size DNA molecules.

    DOI: 10.1007/978-1-0716-0323-9_12

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  • The conserved histone variant H2A.Z illuminates meiotic recombination initiation. Reviewed

    Yamada S, Kugou K, Ding DQ, Fujita Y, Hiraoka Y, Murakami H, Ohta K, Yamada T

    Current genetics   2018.3

  • Chk1-cyclin A/Cdk1 axis regulates origin firing programs in mammals. Reviewed

    Nakanishi M, Katsuno Y, Niida H, Murakami H, Shimada M

    Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology   18 ( 1 )   103 - 113   2010.1

  • Identification and Characterization of an Ecl1-Family Gene in Saccharomyces cerevisiae Reviewed

    Kenko Azuma, Hokuto Ohtsuka, Satoka Mita, Hiroshi Murakami, Hirofumi Aiba

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   73 ( 12 )   2787 - 2789   2009.12

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:TAYLOR & FRANCIS LTD  

    We found that YGR146C of Saccharomyces cerevisiae encodes a functional homolog of Ecl1 that is involved in the chronological lifespan of Schizosaccharomyces pombe. When YGR146C is overexpressed, it extends the viability of wild-type S. cerevisiae cells after entry into the stationary phase, as in the case of Ecl1. We propose that Ecl1 family proteins are novel regulatory factors involved in chronological lifespan among yeasts.

    DOI: 10.1271/bbb.90599

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  • DNA damage responses in skin biology--implications in tumor prevention and aging acceleration. Reviewed

    Nakanishi M, Niida H, Murakami H, Shimada M

    Journal of dermatological science   56 ( 2 )   76 - 81   2009.11

  • Fission yeast Cdc24 is an RFC- and PCNA-interacting factor essential for S phase completion. Reviewed

    Tanaka H, Tanaka K, Murakami H, Okayama H

    Mol. Cell. Biol., 19 (2), 1038-1048   1999

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Books

  • Paul Nurse, バイクに跨った遺伝子の魔術師

    羊土社  2016 

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  • Paul Nurse, バイクに跨った遺伝子の魔術師

    Hiroshi Murakami( Role: Sole author)

    Yodosya  2016 

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    Total pages:4   Responsible for pages:4   Language:Japanese  

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  • 実験医学

    羊土社  2004.9 

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  • 実験医学

    羊土社  2002.3 

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  • 実験医学別冊 新用語ライブラリー 細胞周期(野島博編)第二版

    羊土社  1999.10 

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  • 実験医学

    羊土社  1996.5 

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  • 実験医学

    羊土社  1994.1 

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MISC

  • The histone variant H2A.Z promotes initiation of meiotic recombination in fission yeast.

    Yamada S, Kugou K, Ding DQ, Fujita Y, Hiraoka Y, Murakami H, Ohta K, Yamada T

    Nucleic Acids Res.   609 - 620   2018.1

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  • The histone variant H2A.Z promotes initiation of meiotic recombination in fission yeast. Reviewed International journal

    Yamada S, Kugou K, Ding DQ, Fujita Y, Hiraoka Y, Murakami H, Ohta K, Yamada T

    Nucleic Acids Res.   46 ( 2 )   609 - 620   2018.1

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    Language:English   Publisher:Oxford University Press  

    Meiotic recombination is initiated by programmed formation of DNA double strand breaks (DSBs), which are mainly formed at recombination hotspots. Meiotic DSBs require multiple proteins including the conserved protein Spo11 and its cofactors, and are influenced by chromatin structure. For example, local chromatin around hotspots directly impacts DSB formation. Moreover, DSB is proposed to occur in a higher-order chromatin architecture termed 'axis-loop', in which many loops protrude from cohesin-enriched axis. However, still much remains unknown about how meiotic DSBs are generated in chromatin. Here, we show that the conserved histone H2A variant H2A.Z promotes meiotic DSB formation in fission yeast. Detailed investigation revealed that H2A.Z is neither enriched around hotspots nor axis sites, and that transcript levels of DSB-promoting factors were maintained without H2A.Z. Moreover, H2A.Z appeared to be dispensable for chromatin binding of meiotic cohesin. Instead, in H2A.Z-lacking mutants, multiple proteins involved in DSB formation, such as the fission yeast Spo11 homolog and its regulators, were less associated with chromatin. Remarkably, nuclei were more compact in the absence of H2A.Z. Based on these, we propose that fission yeast H2A.Z promotes meiotic DSB formation partly through modulating chromosome architecture to enhance interaction between DSB-related proteins and cohesin-loaded chromatin.

    DOI: 10.1093/nar/gkx1110

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  • 悪性中皮腫におけるBAP1遺伝子変異に対する合成致死遺伝子の網羅的探索

    村上 優子, 渡並, 天野 美希, 小木曽 杏奈, 清成 信一, 紅 朋浩, 金田 典雄, 門松 健治, 村上 浩士, 関戸 好孝

    生命科学系学会合同年次大会   2017年度   [3AT26 - 05(3P   2017.12

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    Language:Japanese   Publisher:生命科学系学会合同年次大会運営事務局  

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  • Sulfur restriction extends fission yeast chronological lifespan through Ecl1 family genes by downregulation of ribosome

    Hokuto Ohtsuka, Masahiro Takinami, Takafumi Shimasaki, Takahide Hibi, Hiroshi Murakami, Hirofumi Aiba

    Molecular Microbiology   105 ( 1 )   84 - 97   2017.7

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    Language:English   Publisher:Blackwell Publishing Ltd  

    Nutritional restrictions such as calorie restrictions are known to increase the lifespan of various organisms. Here, we found that a restriction of sulfur extended the chronological lifespan (CLS) of the fission yeast Schizosaccharomyces pombe. The restriction decreased cellular size, RNA content, and ribosomal proteins and increased sporulation rate. These responses depended on Ecl1 family genes, the overexpression of which results in the extension of CLS. We also showed that the Zip1 transcription factor results in the sulfur restriction-dependent expression of the ecl1+ gene. We demonstrated that a decrease in ribosomal activity results in the extension of CLS. Based on these observations, we propose that sulfur restriction extends CLS through Ecl1 family genes in a ribosomal activity-dependent manner.

    DOI: 10.1111/mmi.13686

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  • Sulfur restriction extends fission yeast chronological lifespan through Ecl1 family genes by downregulation of ribosome

    Hokuto Ohtsuka, Masahiro Takinami, Takafumi Shimasaki, Takahide Hibi, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR MICROBIOLOGY   105 ( 1 )   84 - 97   2017.7

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    Language:English   Publisher:WILEY  

    Nutritional restrictions such as calorie restrictions are known to increase the lifespan of various organisms. Here, we found that a restriction of sulfur extended the chronological lifespan (CLS) of the fission yeast Schizosaccharomyces pombe. The restriction decreased cellular size, RNA content, and ribosomal proteins and increased sporulation rate. These responses depended on Ecl1 family genes, the overexpression of which results in the extension of CLS. We also showed that the Zip1 transcription factor results in the sulfur restriction-dependent expression of the ecl1(+) gene. We demonstrated that a decrease in ribosomal activity results in the extension of CLS. Based on these observations, we propose that sulfur restriction extends CLS through Ecl1 family genes in a ribosomal activity-dependent manner.

    DOI: 10.1111/mmi.13686

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  • Correlation of Meiotic DSB Formation and Transcription Initiation Around Fission Yeast Recombination Hotspots

    Shintaro Yamada, Mika Okamura, Arisa Oda, Hiroshi Murakami, Kunihiro Ohta, Takatomi Yamada

    GENETICS   206 ( 2 )   801 - 809   2017.6

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    Language:English   Publisher:GENETICS SOCIETY AMERICA  

    Meiotic homologous recombination, a critical event for ensuring faithful chromosome segregation and creating genetic diversity, is initiated by programmed DNA double-strand breaks (DSBs) formed at recombination hotspots. Meiotic DSB formation is likely to be influenced by other DNA-templated processes including transcription, but how DSB formation and transcription interact with each other has not been understood well. In this study, we used fission yeast to investigate a possible interplay of these two events. A group of hotspots in fission yeast are associated with sequences similar to the cyclic AMP response element and activated by the ATF/CREB family transcription factor dimer Atf1-Pcr1. We first focused on one of those hotspots, ade6-3049, and Atf1. Our results showed that multiple transcripts, shorter than the ade6 full-length messenger RNA, emanate from a region surrounding the ade6-3049 hotspot. Interestingly, we found that the previously known recombination- activation region of Atf1 is also a transactivation domain, whose deletion affected DSB formation and short transcript production at ade6-3049. These results point to a possibility that the two events may be related to each other at ade6-3049. In fact, comparison of published maps of meiotic transcripts and hotspots suggested that hotspots are very often located close to meiotically transcribed regions. These observations therefore propose that meiotic DSB formation in fission yeast may be connected to transcription of surrounding regions.

    DOI: 10.1534/genetics.116.197954

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  • Correlation of Meiotic DSB Formation and Transcription Initiation Around Fission Yeast Recombination Hotspots

    Shintaro Yamada, Mika Okamura, Arisa Oda, Hiroshi Murakami, Kunihiro Ohta, Takatomi Yamada

    GENETICS   206 ( 2 )   801 - 809   2017.6

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    Language:English   Publisher:GENETICS SOCIETY AMERICA  

    Meiotic homologous recombination, a critical event for ensuring faithful chromosome segregation and creating genetic diversity, is initiated by programmed DNA double-strand breaks (DSBs) formed at recombination hotspots. Meiotic DSB formation is likely to be influenced by other DNA-templated processes including transcription, but how DSB formation and transcription interact with each other has not been understood well. In this study, we used fission yeast to investigate a possible interplay of these two events. A group of hotspots in fission yeast are associated with sequences similar to the cyclic AMP response element and activated by the ATF/CREB family transcription factor dimer Atf1-Pcr1. We first focused on one of those hotspots, ade6-3049, and Atf1. Our results showed that multiple transcripts, shorter than the ade6 full-length messenger RNA, emanate from a region surrounding the ade6-3049 hotspot. Interestingly, we found that the previously known recombination- activation region of Atf1 is also a transactivation domain, whose deletion affected DSB formation and short transcript production at ade6-3049. These results point to a possibility that the two events may be related to each other at ade6-3049. In fact, comparison of published maps of meiotic transcripts and hotspots suggested that hotspots are very often located close to meiotically transcribed regions. These observations therefore propose that meiotic DSB formation in fission yeast may be connected to transcription of surrounding regions.

    DOI: 10.1534/genetics.116.197954

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  • Ecl1 is a zinc-binding protein involved in the zinc-limitation-dependent extension of chronological life span in fission yeast

    Takafumi Shimasaki, Hokuto Ohtsuka, Chikako Naito, Kenko Azuma, Takeshi Tenno, Hidekazu Hiroaki, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   292 ( 2 )   475 - 481   2017.4

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    Language:English   Publisher:SPRINGER HEIDELBERG  

    Overexpression of Ecl1-family genes (ecl1(+), ecl2(+), and ecl3(+)) results in the extension of the chronological life span in Schizosaccharomyces pombe. However, the mechanism for this extension has not been defined clearly. Ecl1-family proteins consist of approximately 80 amino acids, and four cysteine residues are conserved in their N-terminal domains. This study focused on the Ecl1 protein, mutating its cysteine residues sequentially to confirm their importance. As a result, all mutated Ecl1 proteins nearly lost the function to extend the chronological life span, suggesting that these four cysteine residues are essential for the Ecl1 protein. Utilizing ICP-AES (inductively coupled plasma atomic emission spectroscopy) analysis, we found that wild-type Ecl1 proteins contain zinc, while cysteine-mutated Ecl1 proteins do not. We also analyzed the effect of environmental zinc on the chronological life span. We found that zinc limitation extends the chronological life span, and this extension depends on the Ecl1-family proteins.

    DOI: 10.1007/s00438-016-1285-x

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  • Ecl1 is a zinc-binding protein involved in the zinc-limitation-dependent extension of chronological life span in fission yeast

    Takafumi Shimasaki, Hokuto Ohtsuka, Chikako Naito, Kenko Azuma, Takeshi Tenno, Hidekazu Hiroaki, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   292 ( 2 )   475 - 481   2017.4

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    Overexpression of Ecl1-family genes (ecl1(+), ecl2(+), and ecl3(+)) results in the extension of the chronological life span in Schizosaccharomyces pombe. However, the mechanism for this extension has not been defined clearly. Ecl1-family proteins consist of approximately 80 amino acids, and four cysteine residues are conserved in their N-terminal domains. This study focused on the Ecl1 protein, mutating its cysteine residues sequentially to confirm their importance. As a result, all mutated Ecl1 proteins nearly lost the function to extend the chronological life span, suggesting that these four cysteine residues are essential for the Ecl1 protein. Utilizing ICP-AES (inductively coupled plasma atomic emission spectroscopy) analysis, we found that wild-type Ecl1 proteins contain zinc, while cysteine-mutated Ecl1 proteins do not. We also analyzed the effect of environmental zinc on the chronological life span. We found that zinc limitation extends the chronological life span, and this extension depends on the Ecl1-family proteins.

    DOI: 10.1007/s00438-016-1285-x

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  • SGO1 is involved in the DNA damage response in MYCN-amplified neuroblastoma cells

    Yuko Murakami-Tonami, Haruna Ikeda, Ryota Yamagishi, Mao Inayoshi, Shiho Inagaki, Satoshi Kishida, Yosuke Komata, Jan Koster, Ichiro Takeuchi, Yutaka Kondo, Tohru Maeda, Yoshitaka Sekido, Hiroshi Murakami, Kenji Kadomatsu

    SCIENTIFIC REPORTS   6   p.31615   2016.8

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    Language:English   Publisher:NATURE PUBLISHING GROUP  

    Shugoshin 1 (SGO1) is required for accurate chromosome segregation during mitosis and meiosis; however, its other functions, especially at interphase, are not clearly understood. Here, we found that downregulation of SGO1 caused a synergistic phenotype in cells overexpressing MYCN. Downregulation of SGO1 impaired proliferation and induced DNA damage followed by a senescence-like phenotype only in MYCN-overexpressing neuroblastoma cells. In these cells, SGO1 knockdown induced DNA damage, even during interphase, and this effect was independent of cohesin. Furthermore, MYCN-promoted SGO1 transcription and SGO1 expression tended to be higher in MYCN- or MYC-overexpressing cancers. Together, these findings indicate that SGO1 plays a role in the DNA damage response in interphase. Therefore, we propose that SGO1 represents a potential molecular target for treatment of MYCN-amplified neuroblastoma.

    DOI: 10.1038/srep31615

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  • SGO1 is involved in the DNA damage response in MYCN-amplified neuroblastoma cells

    Yuko Murakami-Tonami, Haruna Ikeda, Ryota Yamagishi, Mao Inayoshi, Shiho Inagaki, Satoshi Kishida, Yosuke Komata, Jan Koster, Ichiro Takeuchi, Yutaka Kondo, Tohru Maeda, Yoshitaka Sekido, Hiroshi Murakami, Kenji Kadomatsu

    SCIENTIFIC REPORTS   6 ( 6 )   p.31615   2016.8

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    Language:English   Publisher:NATURE PUBLISHING GROUP  

    Shugoshin 1 (SGO1) is required for accurate chromosome segregation during mitosis and meiosis; however, its other functions, especially at interphase, are not clearly understood. Here, we found that downregulation of SGO1 caused a synergistic phenotype in cells overexpressing MYCN. Downregulation of SGO1 impaired proliferation and induced DNA damage followed by a senescence-like phenotype only in MYCN-overexpressing neuroblastoma cells. In these cells, SGO1 knockdown induced DNA damage, even during interphase, and this effect was independent of cohesin. Furthermore, MYCN-promoted SGO1 transcription and SGO1 expression tended to be higher in MYCN- or MYC-overexpressing cancers. Together, these findings indicate that SGO1 plays a role in the DNA damage response in interphase. Therefore, we propose that SGO1 represents a potential molecular target for treatment of MYCN-amplified neuroblastoma.

    DOI: 10.1038/srep31615

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  • Sexual development of Schizosaccharomyces pombe is induced by zinc or iron limitation through Ecl1 family genes

    Hokuto Ohtsuka, Maiko Ishida, Chikako Naito, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   290 ( 1 )   173 - 185   2015.2

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    Ecl1 family genes (ecl1 (+), ecl2 (+), and ecl3 (+)) have been identified as extenders of the chronological lifespan in Schizosaccharomyces pombe. Here, we found that the triple-deletion mutant (a dagger ecl1/2/3) had a defect in sexual development after entry into the stationary phase, although the mutant essentially showed normal mating and sporulation under nitrogen starvation or carbon limitation. In this study, we showed that limitation of zinc or iron can be a signal for sexual development of S. pombe cells grown in Edinburgh minimal medium until the stationary phase and that Ecl1 family genes are important for this process. Because the a dagger ecl1/2/3 mutant diminishes the zinc depletion-dependent gene expression, Ecl1 family proteins may function as zinc sensors in the process of sexual development.

    DOI: 10.1007/s00438-014-0911-8

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  • Sexual development of Schizosaccharomyces pombe is induced by zinc or iron limitation through Ecl1 family genes

    Hokuto Ohtsuka, Maiko Ishida, Chikako Naito, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   290 ( 1 )   173 - 185   2015.2

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    Language:English   Publisher:SPRINGER HEIDELBERG  

    Ecl1 family genes (ecl1 (+), ecl2 (+), and ecl3 (+)) have been identified as extenders of the chronological lifespan in Schizosaccharomyces pombe. Here, we found that the triple-deletion mutant (a dagger ecl1/2/3) had a defect in sexual development after entry into the stationary phase, although the mutant essentially showed normal mating and sporulation under nitrogen starvation or carbon limitation. In this study, we showed that limitation of zinc or iron can be a signal for sexual development of S. pombe cells grown in Edinburgh minimal medium until the stationary phase and that Ecl1 family genes are important for this process. Because the a dagger ecl1/2/3 mutant diminishes the zinc depletion-dependent gene expression, Ecl1 family proteins may function as zinc sensors in the process of sexual development.

    DOI: 10.1007/s00438-014-0911-8

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  • Regulation of wee1+ expression during meiosis in fission yeast

    Yuko Murakami-Tonami, Hokuto Ohtsuka, Hirofumi Aiba, Hiroshi Murakami

    Cell Cycle   13 ( 18 )   2853 - 2858   2014.9

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    Language:English   Publisher:Landes Bioscience  

    In eukaryotes, the cyclin-dependent kinase Cdk1p (Cdc2p) plays a central role in entry into and progression through nuclear division during mitosis and meiosis. Cdk1p is activated during meiotic nuclear divisions by dephosphorylation of its tyrosine-15 residue. The phosphorylation status of this residue is largely determined by the Wee1p kinase and the Cdc25p phosphatase. In fission yeast, the forkhead-type transcription factor Mei4p is essential for entry into the first meiotic nuclear division. We recently identified cdc25+ as an essential target of Mei4p in the control of entry into meiosis I. Here, we show that wee1+ is another important target of Mei4p in the control of entry into meiosis I. Mei4p bound to the upstream region of wee1+ in vivo and in vitro and inhibited expression of wee1+, whereas Mei4p positively regulated expression of the adjacent pseudogene. Overexpression of Mei4p inhibited expression of wee1 + and induced that of the pseudogene. Conversely, deletion of Mei4p did not decrease expression of wee1+ but inhibited that of the pseudogene. In addition, deletion of Mei4p-binding regions delayed repression of wee1+ expression as well as induction of expression of the pseudogene. These results suggest that repression of wee1+ expression is primarily owing to Mei4p-mediated transcriptional interference.

    DOI: 10.4161/15384101.2014.946807

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  • Regulation of wee1(+) expression during meiosis in fission yeast

    Yuko Murakami-Tonami, Hokuto Ohtsuka, Hirofumi Aiba, Hiroshi Murakami

    CELL CYCLE   13 ( 18 )   2853 - 2858   2014.9

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    Language:English   Publisher:TAYLOR & FRANCIS INC  

    In eukaryotes, the cyclin-dependent kinase Cdk1p (Cdc2p) plays a central role in entry into and progression through nuclear division during mitosis and meiosis. Cdk1p is activated during meiotic nuclear divisions by dephosphorylation of its tyrosine-15 residue. The phosphorylation status of this residue is largely determined by the Wee1p kinase and the Cdc25p phosphatase. In fission yeast, the forkhead-type transcription factor Mei4p is essential for entry into the first meiotic nuclear division. We recently identified cdc25(+) as an essential target of Mei4p in the control of entry into meiosis I. Here, we show that wee1(+) is another important target of Mei4p in the control of entry into meiosis I. Mei4p bound to the upstream region of wee1(+) in vivo and in vitro and inhibited expression of wee1(+), whereas Mei4p positively regulated expression of the adjacent pseudogene. Overexpression of Mei4p inhibited expression of wee1(+) and induced that of the pseudogene. Conversely, deletion of Mei4p did not decrease expression of wee1(+) but inhibited that of the pseudogene. In addition, deletion of Mei4p-binding regions delayed repression of wee1(+) expression as well as induction of expression of the pseudogene. These results suggest that repression of wee1(+) expression is primarily owing to Mei4p-mediated transcriptional interference.

    DOI: 10.4161/15384101.2014.946807

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  • Ecl1 is activated by the transcription factor Atf1 in response to H2O2 stress in Schizosaccharomyces pombe

    Takafumi Shimasaki, Hokuto Ohtsuka, Chikako Naito, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   289 ( 4 )   685 - 693   2014.8

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    Language:English   Publisher:SPRINGER HEIDELBERG  

    The Ecl1 family genes extend the lifespan of fission yeast when overexpressed. They also cause resistance against H2O2 stress. In this study, we found that the bZip transcription factor Atf1 is a direct activator of the induction of extender of chronological lifespan (ecl1 (+)) by H2O2 stress. Based on ChIP analysis, we identified that Atf1 binds to the upstream DNA region of ecl1 (+). Previously, we reported that overexpression of ecl1 (+) increased the expression of the catalase-encoding ctt1 (+). This ecl1 (+)-dependent increase of ctt1 (+) expression occurred in a dagger atf1 mutant. On the other hand, the activation of ctt1 (+) caused by the a dagger pyp1 mutation, which enhances Sty1-Atf1 activity, could occur in a dagger ecl1 mutant. Based on these results, we propose that Atf1 can regulate ctt1 (+) in both an Ecl1-dependent and an Ecl1-independent manner.

    DOI: 10.1007/s00438-014-0845-1

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  • Ecl1 is activated by the transcription factor Atf1 in response to H2O2 stress in Schizosaccharomyces pombe

    Takafumi Shimasaki, Hokuto Ohtsuka, Chikako Naito, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   289 ( 4 )   685 - 693   2014.8

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    Language:English   Publisher:SPRINGER HEIDELBERG  

    The Ecl1 family genes extend the lifespan of fission yeast when overexpressed. They also cause resistance against H2O2 stress. In this study, we found that the bZip transcription factor Atf1 is a direct activator of the induction of extender of chronological lifespan (ecl1 (+)) by H2O2 stress. Based on ChIP analysis, we identified that Atf1 binds to the upstream DNA region of ecl1 (+). Previously, we reported that overexpression of ecl1 (+) increased the expression of the catalase-encoding ctt1 (+). This ecl1 (+)-dependent increase of ctt1 (+) expression occurred in a dagger atf1 mutant. On the other hand, the activation of ctt1 (+) caused by the a dagger pyp1 mutation, which enhances Sty1-Atf1 activity, could occur in a dagger ecl1 mutant. Based on these results, we propose that Atf1 can regulate ctt1 (+) in both an Ecl1-dependent and an Ecl1-independent manner.

    DOI: 10.1007/s00438-014-0845-1

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  • Inactivation of SMC2 shows a synergistic lethal response in MYCN-amplified neuroblastoma cells

    Yuko Murakami-Tonami, Satoshi Kishida, Ichiro Takeuchi, Yuki Katou, John M. Maris, Hitoshi Ichikawa, Yutaka Kondo, Yoshitaka Sekido, Katsuhiko Shirahige, Hiroshi Murakami, Kenji Kadomatsu

    CELL CYCLE   13 ( 7 )   1115 - 1131   2014.4

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    The condensin complex is required for chromosome condensation during mitosis; however, the role of this complex during interphase is unclear. Neuroblastoma is the most common extracranial solid tumor of childhood, and it is often lethal. In human neuroblastoma, MYCN gene amplification is correlated with poor prognosis. This study demonstrates that the gene encoding the condensin complex subunit SMC2 is transcriptionally regulated by MYCN. SMC2 also transcriptionally regulates DNA damage response genes in cooperation with MYCN. Downregulation of SMC2 induced DNA damage and showed a synergistic lethal response in MYCN-amplified/overexpression cells, leading to apoptosis in human neuroblastoma cells. Finally, this study found that patients bearing MYCN-amplified tumors showed improved survival when SMC2 expression was low. These results identify novel functions of SMC2 in DNA damage response, and we propose that SMC2 (or the condensin complex) is a novel molecular target for the treatment of MYCN-amplified neuroblastoma.

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  • Inactivation of SMC2 shows a synergistic lethal response in MYCN-amplified neuroblastoma cells

    Yuko Murakami-Tonami, Satoshi Kishida, Ichiro Takeuchi, Yuki Katou, John M. Maris, Hitoshi Ichikawa, Yutaka Kondo, Yoshitaka Sekido, Katsuhiko Shirahige, Hiroshi Murakami, Kenji Kadomatsu

    CELL CYCLE   13 ( 7 )   1115 - 1131   2014.4

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    The condensin complex is required for chromosome condensation during mitosis; however, the role of this complex during interphase is unclear. Neuroblastoma is the most common extracranial solid tumor of childhood, and it is often lethal. In human neuroblastoma, MYCN gene amplification is correlated with poor prognosis. This study demonstrates that the gene encoding the condensin complex subunit SMC2 is transcriptionally regulated by MYCN. SMC2 also transcriptionally regulates DNA damage response genes in cooperation with MYCN. Downregulation of SMC2 induced DNA damage and showed a synergistic lethal response in MYCN-amplified/overexpression cells, leading to apoptosis in human neuroblastoma cells. Finally, this study found that patients bearing MYCN-amplified tumors showed improved survival when SMC2 expression was low. These results identify novel functions of SMC2 in DNA damage response, and we propose that SMC2 (or the condensin complex) is a novel molecular target for the treatment of MYCN-amplified neuroblastoma.

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  • A new pma1 mutation identified in a chronologically long-lived fission yeast mutant

    Chikako Naito, Hirokazu Ito, Tomoko Oshiro, Hokuto Ohtsuka, Hiroshi Murakami, Hirofumi Aiba

    FEBS OPEN BIO   4   829 - 833   2014

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    We isolated a chronologically long-lived mutant of Schizosaccharomyces pombe and found a new mutation in pma1(+) that encoded for an essential P-type proton ATPase. An Asp-138 to Asn mutation resulted in reduced Pma1 activity, concomitant with an increase in the chronological lifespan of this fission yeast. This study corroborates our previous report indicating Pma1 activity is crucial for the determination of life span of fission yeast, and offers information for better understanding of the enzyme, Pma1. (C) 2014 The Authors. Published by Elsevier B.V. on behalf of the Federation of European Biochemical Societies.

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  • A new pma1 mutation identified in a chronologically long-lived fission yeast mutant

    Chikako Naito, Hirokazu Ito, Tomoko Oshiro, Hokuto Ohtsuka, Hiroshi Murakami, Hirofumi Aiba

    FEBS OPEN BIO   4   829 - 833   2014

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    We isolated a chronologically long-lived mutant of Schizosaccharomyces pombe and found a new mutation in pma1(+) that encoded for an essential P-type proton ATPase. An Asp-138 to Asn mutation resulted in reduced Pma1 activity, concomitant with an increase in the chronological lifespan of this fission yeast. This study corroborates our previous report indicating Pma1 activity is crucial for the determination of life span of fission yeast, and offers information for better understanding of the enzyme, Pma1. (C) 2014 The Authors. Published by Elsevier B.V. on behalf of the Federation of European Biochemical Societies.

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  • The Fission Yeast php2 Mutant Displays a Lengthened Chronological Lifespan

    Kazuaki Takuma, Hokuto Ohtsuka, Kenko Azuma, Hiroshi Murakami, Hirofumi Aiba

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   77 ( 7 )   1548 - 1555   2013.7

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    The Schizosaccharomyces pombe php2(+) gene encodes a subunit of the CCAAT-binding factor complex. We found that disruption of the php2(+) gene extended the chronological lifespan of the fission yeast. Moreover, the lifespan of the Delta php2 mutant was barely extended under calorie restricted (CR) conditions. Many other phenotypes of the Delta php2 mutant resembled those of wild-type cells grown under CR conditions, suggesting that the Delta php2 mutant might undergo CR. The mutant also showed low respiratory activity concomitant with decreased expression of the cyc1(+) and rip1(+) genes, both of which are involved in mitochondrial electron transport. On the basis of a chromatin immunoprecipitation assay, we determined that Php2 binds to a DNA region upstream of cyc1(+) and rip1(+) in S. pombe. Here we discuss the possible mechanisms by which the chronological lifespan of Delta php2 mutant is extended.

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  • The Fission Yeast php2 Mutant Displays a Lengthened Chronological Lifespan

    Kazuaki Takuma, Hokuto Ohtsuka, Kenko Azuma, Hiroshi Murakami, Hirofumi Aiba

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   77 ( 7 )   1548 - 1555   2013.7

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    The Schizosaccharomyces pombe php2(+) gene encodes a subunit of the CCAAT-binding factor complex. We found that disruption of the php2(+) gene extended the chronological lifespan of the fission yeast. Moreover, the lifespan of the Delta php2 mutant was barely extended under calorie restricted (CR) conditions. Many other phenotypes of the Delta php2 mutant resembled those of wild-type cells grown under CR conditions, suggesting that the Delta php2 mutant might undergo CR. The mutant also showed low respiratory activity concomitant with decreased expression of the cyc1(+) and rip1(+) genes, both of which are involved in mitochondrial electron transport. On the basis of a chromatin immunoprecipitation assay, we determined that Php2 binds to a DNA region upstream of cyc1(+) and rip1(+) in S. pombe. Here we discuss the possible mechanisms by which the chronological lifespan of Delta php2 mutant is extended.

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  • Screening for long-lived genes identifies Oga1, a guanine-quadruplex associated protein that affects the chronological lifespan of the fission yeast Schizosaccharomyces pombe

    Hokuto Ohtsuka, Shingo Ogawa, Hideaki Kawamura, Erika Sakai, Keiko Ichinose, Hiroshi Murakami, Hirofumi Aiba

    Molecular Genetics and Genomics   288 ( 5-6 )   285 - 295   2013.6

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    Schizosaccharomyces pombe and Saccharomyces cerevisiae are excellent model organisms to study lifespan. We conducted screening to identify novel genes that, when overexpressed, extended the chronological lifespan of fission yeast. We identified seven genes, among which we focused on SPBC16A3.08c. The gene product showed similarity to Ylr150w of S. cerevisiae, which has affinity for guanine-quadruplex nucleic acids (G4). The SPBC16A3.08c product associated with G4 in vitro and complemented the phenotype of an S. cerevisiae Ylr150w deletion mutant. From these results, we proposed that SPBC16A3.08c encoded for a functional homolog of Ylr150w, which we designated ortholog of G4-associated protein (oga1 +). oga1 + overexpression extended the chronological lifespan and also decreased mating efficiency and caused both high and low temperature-sensitive growth. Deleting oga1 + resulted in caffeine-sensitive and canavanine-resistant phenotypes. Based on these results, we discuss the function of Oga1 on the chronological lifespan of fission yeast. © 2013 Springer-Verlag Berlin Heidelberg.

    DOI: 10.1007/s00438-013-0748-6

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  • Screening for long-lived genes identifies Oga1, a guanine-quadruplex associated protein that affects the chronological lifespan of the fission yeast Schizosaccharomyces pombe

    Hokuto Ohtsuka, Shingo Ogawa, Hideaki Kawamura, Erika Sakai, Keiko Ichinose, Hiroshi Murakami, Hirofumi Aiba

    Molecular Genetics and Genomics   288 ( 5-6 )   285 - 295   2013.6

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    Schizosaccharomyces pombe and Saccharomyces cerevisiae are excellent model organisms to study lifespan. We conducted screening to identify novel genes that, when overexpressed, extended the chronological lifespan of fission yeast. We identified seven genes, among which we focused on SPBC16A3.08c. The gene product showed similarity to Ylr150w of S. cerevisiae, which has affinity for guanine-quadruplex nucleic acids (G4). The SPBC16A3.08c product associated with G4 in vitro and complemented the phenotype of an S. cerevisiae Ylr150w deletion mutant. From these results, we proposed that SPBC16A3.08c encoded for a functional homolog of Ylr150w, which we designated ortholog of G4-associated protein (oga1 +). oga1 + overexpression extended the chronological lifespan and also decreased mating efficiency and caused both high and low temperature-sensitive growth. Deleting oga1 + resulted in caffeine-sensitive and canavanine-resistant phenotypes. Based on these results, we discuss the function of Oga1 on the chronological lifespan of fission yeast. © 2013 Springer-Verlag Berlin Heidelberg.

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  • Extension of Chronological Lifespan by ScEcl1 Depends on Mitochondria in Saccharomyces cerevisiae

    Kenko Azuma, Hokuto Ohtsuka, Hiroshi Murakami, Hirofumi Aiba

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   76 ( 10 )   1938 - 1942   2012.10

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    Ecl1, a product of the YGR146C gene in Saccharomyces cerevisiae, was identified as a factor involved in chronological lifespan. In this study we found evidence that the function of Ecl1 in the extension of chronological lifespan is dependent on mitochondrial function. The respiratory activity of cells increased when Ecl1 was overexpressed or cells were grown under calorie restriction, but there was no additive effect of calorie restriction and Ecl1 overexpression on increases in respiratory activity or on the extension of chronological lifespan. Based on these results, we propose that overexpression of Ecl1 has same effect as caloric restriction and that its function also depends on mitochondria, just like caloric restriction.

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  • Extension of Chronological Lifespan by ScEcl1 Depends on Mitochondria in Saccharomyces cerevisiae

    Kenko Azuma, Hokuto Ohtsuka, Hiroshi Murakami, Hirofumi Aiba

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   76 ( 10 )   1938 - 1942   2012.10

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    Ecl1, a product of the YGR146C gene in Saccharomyces cerevisiae, was identified as a factor involved in chronological lifespan. In this study we found evidence that the function of Ecl1 in the extension of chronological lifespan is dependent on mitochondrial function. The respiratory activity of cells increased when Ecl1 was overexpressed or cells were grown under calorie restriction, but there was no additive effect of calorie restriction and Ecl1 overexpression on increases in respiratory activity or on the extension of chronological lifespan. Based on these results, we propose that overexpression of Ecl1 has same effect as caloric restriction and that its function also depends on mitochondria, just like caloric restriction.

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  • Another way to induce synchronous meiosis

    Hiroshi Murakami, Hirofumi Aiba

    CELL CYCLE   11 ( 10 )   1874 - 1875   2012.5

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    DOI: 10.4161/cc.20511

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  • Another way to induce synchronous meiosis

    Hiroshi Murakami, Hirofumi Aiba

    CELL CYCLE   11 ( 10 )   1874 - 1875   2012.5

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  • Transient Structure Associated with the Spindle Pole Body Directs Meiotic Microtubule Reorganization in S. pombe

    Charlotta Funaya, Shivanthi Samarasinghe, Sabine Pruggnaller, Midori Ohta, Yvonne Connolly, Jan Mueller, Hiroshi Murakami, Agnes Grallert, Masayuki Yamamoto, Duncan Smith, Claude Antony, Kayoko Tanaka

    CURRENT BIOLOGY   22 ( 7 )   562 - 574   2012.4

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    Background: Vigorous chromosome movements driven by cytoskeletal assemblies are a widely conserved feature of sexual differentiation to facilitate meiotic recombination. In fission yeast, this process involves the dramatic conversion of arrays of cytoplasmic microtubules (MTs), generated from multiple MT organizing centers (MTOCs), into a single radial MT (rMT) array associated with the spindle pole body (SPB), the major MTOC during meiotic prophase. The rMT is then dissolved upon the onset of meiosis I when a bipolar spindle emerges to conduct chromosome segregation. Structural features and molecular mechanisms that govern these dynamic MT rearrangements are poorly understood.
    Results: Electron tomography of the SPBs showed that the rMT emanates from a newly recognized amorphous structure, which we term the rMTOC. The rMTOC, which resides at the cytoplasmic side of the SPB, is highly enriched in gamma-tubulin reminiscent of the pericentriolar material of higher eukaryotic centrosomes. Formation of the rMTOC depends on Hrs1/Mcp6, a meiosis-specific SPB component that is located at the rMTOC. At the onset of meiosis I, Hrs1/Mcp6 is subject to strict downregulation by both proteasome-dependent degradation and phosphorylation leading to complete inactivation of the rMTOC. This ensures rMT dissolution and bipolar spindle formation.
    Conclusions: Our study reveals the molecular basis for the transient generation of a novel MTOC, which triggers a program of MT rearrangement that is required for meiotic differentiation.

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  • Transient Structure Associated with the Spindle Pole Body Directs Meiotic Microtubule Reorganization in S. pombe

    Charlotta Funaya, Shivanthi Samarasinghe, Sabine Pruggnaller, Midori Ohta, Yvonne Connolly, Jan Mueller, Hiroshi Murakami, Agnes Grallert, Masayuki Yamamoto, Duncan Smith, Claude Antony, Kayoko Tanaka

    CURRENT BIOLOGY   22 ( 7 )   562 - 574   2012.4

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    Background: Vigorous chromosome movements driven by cytoskeletal assemblies are a widely conserved feature of sexual differentiation to facilitate meiotic recombination. In fission yeast, this process involves the dramatic conversion of arrays of cytoplasmic microtubules (MTs), generated from multiple MT organizing centers (MTOCs), into a single radial MT (rMT) array associated with the spindle pole body (SPB), the major MTOC during meiotic prophase. The rMT is then dissolved upon the onset of meiosis I when a bipolar spindle emerges to conduct chromosome segregation. Structural features and molecular mechanisms that govern these dynamic MT rearrangements are poorly understood.
    Results: Electron tomography of the SPBs showed that the rMT emanates from a newly recognized amorphous structure, which we term the rMTOC. The rMTOC, which resides at the cytoplasmic side of the SPB, is highly enriched in gamma-tubulin reminiscent of the pericentriolar material of higher eukaryotic centrosomes. Formation of the rMTOC depends on Hrs1/Mcp6, a meiosis-specific SPB component that is located at the rMTOC. At the onset of meiosis I, Hrs1/Mcp6 is subject to strict downregulation by both proteasome-dependent degradation and phosphorylation leading to complete inactivation of the rMTOC. This ensures rMT dissolution and bipolar spindle formation.
    Conclusions: Our study reveals the molecular basis for the transient generation of a novel MTOC, which triggers a program of MT rearrangement that is required for meiotic differentiation.

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  • Chronological lifespan extension by Ecl1 family proteins depends on Prr1 response regulator in fission yeast

    Hokuto Ohtsuka, Kenko Azuma, Sachiko Kubota, Hiroshi Murakami, Yuko Giga-Hama, Hideki Tohda, Hirofumi Aiba

    GENES TO CELLS   17 ( 1 )   39 - 52   2012.1

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    ecl1 +, ecl2+ and ecl3+ genes encode highly homologous small proteins, and their over-expressions confer both H2O2 stress resistance and chronological lifespan extension on Schizosaccharomyces pombe. However, the mechanisms of how these Ecl1 family proteins function have not been elucidated. In this study, we conducted microarray analysis and identified that the expression of genes involved in sexual development and stress responses was affected by the over-expression of Ecl1 family proteins. In agreement with the mRNA expression profile, the cells over-expressing Ecl1 family proteins showed high mating efficiency and resistant phenotype to H2O2. We showed that the H2O2-resistant phenotype depends on catalase Ctt1, and over-expression of ctt1+ does not affect chronological lifespan. Furthermore, we showed that six genes, ste11+, spk1+, hsr1+, rsv2+, hsp9+ and lsd90+, whose expressions are increased in cells over-expressing Ecl1 family proteins are involved in chronological lifespan in fission yeast. Among these genes, the induction of ste11+ and hsr1+ was dependent on a transcription factor Prr1, and we showed that the extensions of chronological lifespan by Ecl1 family proteins are remarkably diminished in prr1 deletion mutant. From these results, we propose that Ecl1-family proteins conduct H2O2 stress resistance and chronological lifespan extension in ctt1+- and prr1+-dependent manner, respectively.

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  • Chronological lifespan extension by Ecl1 family proteins depends on Prr1 response regulator in fission yeast

    Hokuto Ohtsuka, Kenko Azuma, Sachiko Kubota, Hiroshi Murakami, Yuko Giga-Hama, Hideki Tohda, Hirofumi Aiba

    GENES TO CELLS   17 ( 1 )   39 - 52   2012.1

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    ecl1 +, ecl2+ and ecl3+ genes encode highly homologous small proteins, and their over-expressions confer both H2O2 stress resistance and chronological lifespan extension on Schizosaccharomyces pombe. However, the mechanisms of how these Ecl1 family proteins function have not been elucidated. In this study, we conducted microarray analysis and identified that the expression of genes involved in sexual development and stress responses was affected by the over-expression of Ecl1 family proteins. In agreement with the mRNA expression profile, the cells over-expressing Ecl1 family proteins showed high mating efficiency and resistant phenotype to H2O2. We showed that the H2O2-resistant phenotype depends on catalase Ctt1, and over-expression of ctt1+ does not affect chronological lifespan. Furthermore, we showed that six genes, ste11+, spk1+, hsr1+, rsv2+, hsp9+ and lsd90+, whose expressions are increased in cells over-expressing Ecl1 family proteins are involved in chronological lifespan in fission yeast. Among these genes, the induction of ste11+ and hsr1+ was dependent on a transcription factor Prr1, and we showed that the extensions of chronological lifespan by Ecl1 family proteins are remarkably diminished in prr1 deletion mutant. From these results, we propose that Ecl1-family proteins conduct H2O2 stress resistance and chronological lifespan extension in ctt1+- and prr1+-dependent manner, respectively.

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  • Chiasmata Promote Monopolar Attachment of Sister Chromatids and Their Co-Segregation toward the Proper Pole during Meiosis I

    Yukinobu Hirose, Ren Suzuki, Tatsunori Ohba, Yumi Hinohara, Hirotada Matsuhara, Masashi Yoshida, Yuta Itabashi, Hiroshi Murakami, Ayumu Yamamoto

    PLOS GENETICS   7 ( 3 )   e1001329   2011.3

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    The chiasma is a structure that forms between a pair of homologous chromosomes by crossover recombination and physically links the homologous chromosomes during meiosis. Chiasmata are essential for the attachment of the homologous chromosomes to opposite spindle poles (bipolar attachment) and their subsequent segregation to the opposite poles during meiosis I. However, the overall function of chiasmata during meiosis is not fully understood. Here, we show that chiasmata also play a crucial role in the attachment of sister chromatids to the same spindle pole and in their co-segregation during meiosis I in fission yeast. Analysis of cells lacking chiasmata and the cohesin protector Sgo1 showed that loss of chiasmata causes frequent bipolar attachment of sister chromatids during anaphase. Furthermore, high time-resolution analysis of centromere dynamics in various types of chiasmate and achiasmate cells, including those lacking the DNA replication checkpoint factor Mrc1 or the meiotic centromere protein Moa1, showed the following three outcomes: (i) during the pre-anaphase stage, the bipolar attachment of sister chromatids occurs irrespective of chiasma formation; (ii) the chiasma contributes to the elimination of the pre-anaphase bipolar attachment; and (iii) when the bipolar attachment remains during anaphase, the chiasmata generate a bias toward the proper pole during poleward chromosome pulling that results in appropriate chromosome segregation. Based on these results, we propose that chiasmata play a pivotal role in the selection of proper attachments and provide a backup mechanism that promotes correct chromosome segregation when improper attachments remain during anaphase I.

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  • Chiasmata Promote Monopolar Attachment of Sister Chromatids and Their Co-Segregation toward the Proper Pole during Meiosis I

    Yukinobu Hirose, Ren Suzuki, Tatsunori Ohba, Yumi Hinohara, Hirotada Matsuhara, Masashi Yoshida, Yuta Itabashi, Hiroshi Murakami, Ayumu Yamamoto

    PLOS GENETICS   7 ( 3 )   p.e1001329   2011.3

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    The chiasma is a structure that forms between a pair of homologous chromosomes by crossover recombination and physically links the homologous chromosomes during meiosis. Chiasmata are essential for the attachment of the homologous chromosomes to opposite spindle poles (bipolar attachment) and their subsequent segregation to the opposite poles during meiosis I. However, the overall function of chiasmata during meiosis is not fully understood. Here, we show that chiasmata also play a crucial role in the attachment of sister chromatids to the same spindle pole and in their co-segregation during meiosis I in fission yeast. Analysis of cells lacking chiasmata and the cohesin protector Sgo1 showed that loss of chiasmata causes frequent bipolar attachment of sister chromatids during anaphase. Furthermore, high time-resolution analysis of centromere dynamics in various types of chiasmate and achiasmate cells, including those lacking the DNA replication checkpoint factor Mrc1 or the meiotic centromere protein Moa1, showed the following three outcomes: (i) during the pre-anaphase stage, the bipolar attachment of sister chromatids occurs irrespective of chiasma formation; (ii) the chiasma contributes to the elimination of the pre-anaphase bipolar attachment; and (iii) when the bipolar attachment remains during anaphase, the chiasmata generate a bias toward the proper pole during poleward chromosome pulling that results in appropriate chromosome segregation. Based on these results, we propose that chiasmata play a pivotal role in the selection of proper attachments and provide a backup mechanism that promotes correct chromosome segregation when improper attachments remain during anaphase I.

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  • Ecl1, a Regulator of the Chronological Lifespan of Schizosaccharomyces pombe, Is Induced upon Nitrogen Starvation

    Yukiko Miwa, Hokuto Ohtsuka, Chikako Naito, Hiroshi Murakami, Hirofumi Aiba

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   75 ( 2 )   279 - 283   2011.2

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    In fission yeast, ecl1(+) was identified as a novel factor that extends chronological lifespan when overexpressed. Ecl1 is a small protein consisting of 80 amino acids localized mainly in the nucleus. However, the mechanism by which it affects chronological lifespan has not been elucidated clearly. Here we analyzed the expression profile of Ecl1, especially as to cell cycle and growth phase, and found that it is induced upon nitrogen starvation. Then we analyzed the relevance of factors, Atf1, Ste11, and Tor1, which are known to be involved in the signaling of nitrogen starvation. Though the nitrogen starvation-induced expression of Ecl1 did not change in the atfA mutant, induction in both the ste11 Delta mutant and the tor1 Delta mutant showed a delay. Based on these observations, the regulation of Ecl1 is discussed.

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  • Ecl1, a Regulator of the Chronological Lifespan of Schizosaccharomyces pombe, Is Induced upon Nitrogen Starvation

    Yukiko Miwa, Hokuto Ohtsuka, Chikako Naito, Hiroshi Murakami, Hirofumi Aiba

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   75 ( 2 )   279 - 283   2011.2

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    In fission yeast, ecl1(+) was identified as a novel factor that extends chronological lifespan when overexpressed. Ecl1 is a small protein consisting of 80 amino acids localized mainly in the nucleus. However, the mechanism by which it affects chronological lifespan has not been elucidated clearly. Here we analyzed the expression profile of Ecl1, especially as to cell cycle and growth phase, and found that it is induced upon nitrogen starvation. Then we analyzed the relevance of factors, Atf1, Ste11, and Tor1, which are known to be involved in the signaling of nitrogen starvation. Though the nitrogen starvation-induced expression of Ecl1 did not change in the atfA mutant, induction in both the ste11 Delta mutant and the tor1 Delta mutant showed a delay. Based on these observations, the regulation of Ecl1 is discussed.

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  • hsf1(+) extends chronological lifespan through Ecl1 family genes in fission yeast

    Hokuto Ohtsuka, Kenko Azuma, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   285 ( 1 )   67 - 77   2011.1

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    The heat shock factor (HSF), a protein evolutionarily conserved from yeasts to human, regulates the expression of a set of proteins called heat shock proteins (HSPs), many of which function as molecular chaperones. In Saccharomyces cerevisiae, the HSF binds to the 5' upstream region of YGR146C and activates its transcription. YGR146C encodes a functional homolog of ecl1(+), ecl2(+), and ecl3(+) of Schizosaccharomyces pombe. At present, these Edl1 family genes, which are extenders of chronological lifespan, have been identified only in fungi groups. Based on ChIP analysis, we identified that Hsf1 binds to the upstream DNA region of ecl2(+) after heat shock in S. pombe. In Caenorhabditis elegans, heat shock factor HSF-1 is known to regulate aging and required for the elongation of longevity by dietary restriction. We found that heat shock factor Hsf1 extends chronological lifespan of S. pombe when overexpressed. Moreover, we show that the extension of chronological lifespan by the overproduction of Hsf1 mainly depends on ecl2(+) among Ecl1 family genes. From these results, we suggest that HSF is a conserved regulator of lifespan, at least in yeast and nematode, and Ecl1 family genes such as YGR146C and ecl2(+) are the direct targets of Hsf1 and mediate lifespan extension by Hsf1.

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  • hsf1(+) extends chronological lifespan through Ecl1 family genes in fission yeast

    Hokuto Ohtsuka, Kenko Azuma, Hiroshi Murakami, Hirofumi Aiba

    MOLECULAR GENETICS AND GENOMICS   285 ( 1 )   67 - 77   2011.1

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    The heat shock factor (HSF), a protein evolutionarily conserved from yeasts to human, regulates the expression of a set of proteins called heat shock proteins (HSPs), many of which function as molecular chaperones. In Saccharomyces cerevisiae, the HSF binds to the 5' upstream region of YGR146C and activates its transcription. YGR146C encodes a functional homolog of ecl1(+), ecl2(+), and ecl3(+) of Schizosaccharomyces pombe. At present, these Edl1 family genes, which are extenders of chronological lifespan, have been identified only in fungi groups. Based on ChIP analysis, we identified that Hsf1 binds to the upstream DNA region of ecl2(+) after heat shock in S. pombe. In Caenorhabditis elegans, heat shock factor HSF-1 is known to regulate aging and required for the elongation of longevity by dietary restriction. We found that heat shock factor Hsf1 extends chronological lifespan of S. pombe when overexpressed. Moreover, we show that the extension of chronological lifespan by the overproduction of Hsf1 mainly depends on ecl2(+) among Ecl1 family genes. From these results, we suggest that HSF is a conserved regulator of lifespan, at least in yeast and nematode, and Ecl1 family genes such as YGR146C and ecl2(+) are the direct targets of Hsf1 and mediate lifespan extension by Hsf1.

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  • Mechanisms of dNTP supply that play an essential role in maintaining genome integrity in eukaryotic cells. Reviewed

    Niida H, Shimada M, Murakami H, Nakanishi M

    Cancer Sci.   101 ( 12 )   2505 - 2509   2010.12

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    DOI: 10.1111/j.1349-7006.2010.01719.x

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  • Mechanisms of dNTP supply that play an essential role in maintaining genome integrity in eukaryotic cells

    Hiroyuki Niida, Midori Shimada, Hiroshi Murakami, Makoto Nakanishi

    Cancer Science   101 ( 12 )   2505 - 2509   2010.12

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    Optimization of intracellular concentrations of dNTPs is critical for the fidelity of DNA synthesis during DNA replication and repair because levels that are too high or too low can easily lead to increased rates of mutagenesis. Recent advances in the analysis of intracellular concentrations of dNTPs have suggested that eukaryotes use diverse mechanisms in supplying dNTPs for DNA synthesis during DNA replication and repair. The enzyme ribonucleotide reductase (RNR) is a key enzyme involved in the synthesis of dNTPs. We found that Tip60-dependent recruitment of RNR at sites of DNA damage is essential for supplying a sufficient amount of dNTPs for mammalian DNA repair. In this review, we focus on recent findings related to RNR regulation in eukaryotes of the dNTPs supplied for DNA synthesis. We also discuss the effect of this regulation on mutagenesis and tumorigenesis. (Cancer Sci 2010
    101: 2505-2509) © 2010 Japanese Cancer Association.

    DOI: 10.1111/j.1349-7006.2010.01719.x

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  • Pma1, a P-type Proton ATPase, Is a Determinant of Chronological Life Span in Fission Yeast

    Hirokazu Ito, Tomoko Oshiro, Yasuyuki Fujita, Sachiko Kubota, Chikako Naito, Hokuto Ohtsuka, Hiroshi Murakami, Hirofumi Aiba

    JOURNAL OF BIOLOGICAL CHEMISTRY   285 ( 45 )   34616 - 34620   2010.11

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    Chronological life span is defined by how long a cell can survive in a non-dividing state. In yeast, it is measured by viability after entry into stationary phase. To date, some factors affecting chronological life span have been identified; however, the molecular details of how these factors regulate chronological life span have not yet been elucidated clearly. Because life span is a complicated phenomenon and is supposedly regulated by many factors, it is necessary to identify new factors affecting chronological life span to understand life span regulation. To this end, we have screened for long-lived mutants and identified Pma1, an essential P-type proton ATPase, as one of the determinants of chronological life span. We show that partial loss of Pma1 activity not only by mutations but also by treatment with the Pma1 inhibitory chemical vanadate resulted in the long-lived phenotype in Schizosaccharomyces pombe. These findings suggest a novel way to manipulate chronological life span by modulating Pma1 as a molecular target.

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  • Pma1, a P-type Proton ATPase, Is a Determinant of Chronological Life Span in Fission Yeast

    Hirokazu Ito, Tomoko Oshiro, Yasuyuki Fujita, Sachiko Kubota, Chikako Naito, Hokuto Ohtsuka, Hiroshi Murakami, Hirofumi Aiba

    JOURNAL OF BIOLOGICAL CHEMISTRY   285 ( 45 )   34616 - 34620   2010.11

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    Chronological life span is defined by how long a cell can survive in a non-dividing state. In yeast, it is measured by viability after entry into stationary phase. To date, some factors affecting chronological life span have been identified; however, the molecular details of how these factors regulate chronological life span have not yet been elucidated clearly. Because life span is a complicated phenomenon and is supposedly regulated by many factors, it is necessary to identify new factors affecting chronological life span to understand life span regulation. To this end, we have screened for long-lived mutants and identified Pma1, an essential P-type proton ATPase, as one of the determinants of chronological life span. We show that partial loss of Pma1 activity not only by mutations but also by treatment with the Pma1 inhibitory chemical vanadate resulted in the long-lived phenotype in Schizosaccharomyces pombe. These findings suggest a novel way to manipulate chronological life span by modulating Pma1 as a molecular target.

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  • Casein kinase II is required for the spindle assembly checkpoint by regulating Mad2p in fission yeast.

    Shimada M

    5th International fission yeast meeting,   p.86   2009.10

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  • Casein kinase II is required for the spindle assembly checkpoint by regulating Mad2p in fission yeast. Reviewed

    Shimada M

    5th International fission yeast meeting,   p.86   2009.10

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  • Cdc2p controls the forkhead transcription factor Fkh2p by phosphorylation during sexual differentiation in fission yeast

    Midori Shimada, Chisato Yamada-Namikawa, Yuko Murakami-Tonami, Takashi Yoshida, Makoto Nakanishi, Takeshi Urano, Hiroshi Murakami

    EMBO JOURNAL   27 ( 1 )   132 - 142   2008.1

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    In most eukaryotes, cyclin-dependent kinases (Cdks) play a central role in control of cell-cycle progression. Cdks are inactivated from the end of mitosis to the start of the next cell cycle as well as during sexual differentiation. The forkhead-type transcription factor Fkh2p is required for the periodic expression of many genes and for efficient mating in the fission yeast Schizosaccharomyces pombe. However, the mechanism responsible for coordination of cell-cycle progression with sexual differentiation is still unknown. We now show that Fkh2p is phosphorylated by Cdc2p (Cdk1) and that phosphorylation of Fkh2p on T314 or S462 by this Cdk blocks mating in S. pombe by preventing the induction of ste11(+) transcription, which is required for the onset of sexual development. We propose that functional interaction between Cdks and forkhead transcription factors may link the mitotic cell cycle and sexual differentiation.

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  • Cdc2p controls the forkhead transcription factor Fkh2p by phosphorylation during sexual differentiation in fission yeast

    Midori Shimada, Chisato Yamada-Namikawa, Yuko Murakami-Tonami, Takashi Yoshida, Makoto Nakanishi, Takeshi Urano, Hiroshi Murakami

    EMBO JOURNAL   27 ( 1 )   132 - 142   2008.1

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    In most eukaryotes, cyclin-dependent kinases (Cdks) play a central role in control of cell-cycle progression. Cdks are inactivated from the end of mitosis to the start of the next cell cycle as well as during sexual differentiation. The forkhead-type transcription factor Fkh2p is required for the periodic expression of many genes and for efficient mating in the fission yeast Schizosaccharomyces pombe. However, the mechanism responsible for coordination of cell-cycle progression with sexual differentiation is still unknown. We now show that Fkh2p is phosphorylated by Cdc2p (Cdk1) and that phosphorylation of Fkh2p on T314 or S462 by this Cdk blocks mating in S. pombe by preventing the induction of ste11(+) transcription, which is required for the onset of sexual development. We propose that functional interaction between Cdks and forkhead transcription factors may link the mitotic cell cycle and sexual differentiation.

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  • Mei4p coordinates the onset of meiosis I by regulating cdc25(+) in fission yeast

    Yuko Murakami-Tonami, Chisato Yamada-Namikawa, Akiko Tochigi, Norio Hasegawa, Hisae Kojima, Mitoshi Kunimatsu, Makoto Nakanishi, Hiroshi Murakami

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   104 ( 37 )   14688 - 14693   2007.9

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    The kinase Cdc2p is a central regulator of entry into and progression through nuclear division during mitosis and meiosis in eukaryotes. Cdc2p is activated at the onset of mitosis by dephosphorylation on tyrosine-15, the phosphorylation status of which is determined mainly by the kinase Wee1p and the phosphatase Cdc25p. In fission yeast, the forkhead-type transcription factor Mei4p is required for expression of many genes during meiosis, with mei4 mutant cells arresting before meiosis 1. The mechanism of cell cycle arrest in mei4 cells has remained unknown, however. We now show that cdc25(+) is an important target of Mei4p in control of entry into meiosis 1. Forced dephosphorylation of Cdc2p on tyrosine-15 thus induced meiosis 1 in mei4 mutant cells without a delay, although no spores were formed. We propose that Mei4p acts as a rate-limiting regulator of meiosis I by activating cdc25+ transcription in coordination with other meiotic events.

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  • Mei4p coordinates the onset of meiosis I by regulating cdc25(+) in fission yeast

    Yuko Murakami-Tonami, Chisato Yamada-Namikawa, Akiko Tochigi, Norio Hasegawa, Hisae Kojima, Mitoshi Kunimatsu, Makoto Nakanishi, Hiroshi Murakami

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   104 ( 37 )   14688 - 14693   2007.9

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    The kinase Cdc2p is a central regulator of entry into and progression through nuclear division during mitosis and meiosis in eukaryotes. Cdc2p is activated at the onset of mitosis by dephosphorylation on tyrosine-15, the phosphorylation status of which is determined mainly by the kinase Wee1p and the phosphatase Cdc25p. In fission yeast, the forkhead-type transcription factor Mei4p is required for expression of many genes during meiosis, with mei4 mutant cells arresting before meiosis 1. The mechanism of cell cycle arrest in mei4 cells has remained unknown, however. We now show that cdc25(+) is an important target of Mei4p in control of entry into meiosis 1. Forced dephosphorylation of Cdc2p on tyrosine-15 thus induced meiosis 1 in mei4 mutant cells without a delay, although no spores were formed. We propose that Mei4p acts as a rate-limiting regulator of meiosis I by activating cdc25+ transcription in coordination with other meiotic events.

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  • Regulation of Cdc2p and Cdc13p is required for cell cycle arrest induced by defective RNA splicing in fission yeast

    M Shimada, C Namikawa-Yamada, M Nakanishi, H Murakami

    JOURNAL OF BIOLOGICAL CHEMISTRY   280 ( 38 )   32640 - 32648   2005.9

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    Screening of cdc mutants of fission yeast for those whose cell cycle arrest is independent of the DNA damage checkpoint identified the RNA splicing- deficient cdc28 mutant. A search for mutants of cdc28 cells that enter mitosis with unspliced RNA resulted in the identification of an orb5 point mutant. The orb5(+) gene, which encodes a catalytic subunit of casein kinase II, was found to be required for cell cycle arrest in other mutants with defective RNA metabolism but not for operation of the DNA replication or DNA damage checkpoints. Loss of function of wee1(+) or rad24(+) also suppressed the arrest of several splicing mutants. Overexpression of the major B- type cyclin Cdc13p induced cdc28 cells to enter mitosis. The abundance of Cdc13p was reduced, and the phosphorylation of Cdc2p on tyrosine 15 was maintained in splicing- defective cells. These results suggest that regulation of Cdc13p and Cdc2p is required for G(2) arrest in splicing mutants.

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  • Regulation of Cdc2p and Cdc13p is required for cell cycle arrest induced by defective RNA splicing in fission yeast.

    Shimada M, Namikawa-Yamada C, Nakanishi M, Murakami H

    J Biol Chem.   280 ( 38 )   32640 - 32648   2005.9

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  • A checkpoint control linking meiotic S phase and recombination initiation in fission yeast.

    Tonami Y, Murakami H, Shirahige K, Nakanishi M

    Proc Natl Acad Sci U S A.   5797 - 57801   2005.4

  • A checkpoint control linking meiotic S phase and recombination initiation in fission yeast.

    Tonami Y, Murakami H, Shirahige K, Nakanishi M

    Proc Natl Acad Sci U S A.   102 ( 16 )   5797 - 57801   2005.4

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    DOI: 10.1073/pnas.0407236102

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  • DNA replication checkpoint control mediated by the spindle checkpoint protein Mad2p in fission yeast

    Sugimoto, I, H Murakami, Y Tonami, A Moriyama, M Nakanishi

    JOURNAL OF BIOLOGICAL CHEMISTRY   279 ( 45 )   47372 - 47378   2004.11

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    The relationship between the DNA replication and spindle checkpoints of the cell cycle is unclear, given that in most eukaryotes, spindle formation occurs only after DNA replication is complete. Fission yeast rad3 mutant cells, which are deficient in DNA replication checkpoint function, enter, progress through, and exit mitosis even when DNA replication is blocked. In contrast, the entry of cds1 mutant cells into mitosis is delayed by several hours when DNA replication is inhibited. We show here that this delay in mitotic entry in cds1 cells is due in part to activation of the spindle checkpoint protein Mad2p. In the presence of the DNA replication inhibitor hydroxyurea (HU), cds1 mad2 cells entered and progressed through mitosis earlier than did cds1 cells. Overexpression of Mad2p or inactivation of Slp1p, a regulator of the anaphase-promoting complex, also rescued the checkpoint defect of HU-treated rad3 cells. Rad3p was shown to be involved in the physical interaction between Mad2p and Slp1p in the presence of HU. These results suggested that Mad2p and Slp1p act downstream of Rad3p in the DNA replication checkpoint and that Mad2p is required for the DNA replication checkpoint when Cds1p is compromised.

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  • DNA replication checkpoint control mediated by the spindle checkpoint protein Mad2p in fission yeast

    Sugimoto, I, H Murakami, Y Tonami, A Moriyama, M Nakanishi

    JOURNAL OF BIOLOGICAL CHEMISTRY   279 ( 45 )   47372 - 47378   2004.11

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    The relationship between the DNA replication and spindle checkpoints of the cell cycle is unclear, given that in most eukaryotes, spindle formation occurs only after DNA replication is complete. Fission yeast rad3 mutant cells, which are deficient in DNA replication checkpoint function, enter, progress through, and exit mitosis even when DNA replication is blocked. In contrast, the entry of cds1 mutant cells into mitosis is delayed by several hours when DNA replication is inhibited. We show here that this delay in mitotic entry in cds1 cells is due in part to activation of the spindle checkpoint protein Mad2p. In the presence of the DNA replication inhibitor hydroxyurea (HU), cds1 mad2 cells entered and progressed through mitosis earlier than did cds1 cells. Overexpression of Mad2p or inactivation of Slp1p, a regulator of the anaphase-promoting complex, also rescued the checkpoint defect of HU-treated rad3 cells. Rad3p was shown to be involved in the physical interaction between Mad2p and Slp1p in the presence of HU. These results suggested that Mad2p and Slp1p act downstream of Rad3p in the DNA replication checkpoint and that Mad2p is required for the DNA replication checkpoint when Cds1p is compromised.

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  • Negative regulation of Chk2 expression by p53 is dependent on the CCAAT-binding transcription factor NF-Y

    T Matsui, Y Katsuno, T Inoue, F Fujita, T Joh, H Niida, H Murakami, M Itoh, M Nakanishi

    JOURNAL OF BIOLOGICAL CHEMISTRY   279 ( 24 )   25093 - 25100   2004.6

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    The kinase Chk2 and tumor suppressor p53 participate in an ill defined regulatory interaction in mammalian cells. The abundance of Chk2 mRNA and protein has now been shown to be decreased by the induction of p53 in Saos2 cells. Ionizing radiation also triggered the phosphorylation and subsequent down-regulation of Chk2 in human colorectal HCT116 ( p53(+/+)) cancer cells; irradiation of its isogenic mutant HCT116 (p53(-/-)) cells, which lack functional p53, induced Chk2 phosphorylation but not its down-regulation. In addition, HCT116 (p53(+/+)) cells constitutively expressing a dominant negative p53 (V143A) failed to suppress Chk2 expression after irradiation. Reporter gene assays in HCT116 (p53(+/+)) cells revealed that wild-type p53 repressed, whereas a dominant negative p53 mutant increased, the activity of the human Chk2 gene promoter. Mutational analysis showed that a CCAAT box located between nucleotides -152 and -138 of the promoter was responsible for its negative regulation by p53. Electrophoretic mobility shift assays demonstrated that the transcription factor NF-Y binds to this CCAAT sequence. A dominant negative mutant of NF-YA abolished the effect of p53 on Chk2 promoter activity. These results suggest that p53 negatively regulates Chk2 gene transcription through modulation of NF-Y function and that this regulation may be important for reentry of cells into the cell cycle after DNA damage is repaired.

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  • Negative regulation of Chk2 expression by p53 is dependent on the CCAAT-binding transcription factor NF-Y

    T Matsui, Y Katsuno, T Inoue, F Fujita, T Joh, H Niida, H Murakami, M Itoh, M Nakanishi

    JOURNAL OF BIOLOGICAL CHEMISTRY   279 ( 24 )   25093 - 25100   2004.6

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    The kinase Chk2 and tumor suppressor p53 participate in an ill defined regulatory interaction in mammalian cells. The abundance of Chk2 mRNA and protein has now been shown to be decreased by the induction of p53 in Saos2 cells. Ionizing radiation also triggered the phosphorylation and subsequent down-regulation of Chk2 in human colorectal HCT116 ( p53(+/+)) cancer cells; irradiation of its isogenic mutant HCT116 (p53(-/-)) cells, which lack functional p53, induced Chk2 phosphorylation but not its down-regulation. In addition, HCT116 (p53(+/+)) cells constitutively expressing a dominant negative p53 (V143A) failed to suppress Chk2 expression after irradiation. Reporter gene assays in HCT116 (p53(+/+)) cells revealed that wild-type p53 repressed, whereas a dominant negative p53 mutant increased, the activity of the human Chk2 gene promoter. Mutational analysis showed that a CCAAT box located between nucleotides -152 and -138 of the promoter was responsible for its negative regulation by p53. Electrophoretic mobility shift assays demonstrated that the transcription factor NF-Y binds to this CCAAT sequence. A dominant negative mutant of NF-YA abolished the effect of p53 on Chk2 promoter activity. These results suggest that p53 negatively regulates Chk2 gene transcription through modulation of NF-Y function and that this regulation may be important for reentry of cells into the cell cycle after DNA damage is repaired.

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  • 減数分裂のDNA合成と遺伝子の組み換え開始を制御するチェックポイント機構

    村上浩士

    名古屋市立大学医学会雑誌   55 ( 2 )   75 - 80   2004

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  • The G1/S cyclin Cig2p during meiosis in fission yeast

    A Borgne, H Murakami, J Ayte, P Nurse

    MOLECULAR BIOLOGY OF THE CELL   13 ( 6 )   2080 - 2090   2002.6

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    Cyclin-dependent kinases (CDKs) are important for both mitotic and meiotic cell cycles. In fission yeast, the major CDK, Cdc2p is involved in premeiotic DNA replication and in meiosis H. One of its partners, the mitotic cyclin Cdc13p is known to be required for meiosis, whereas there are no studies on the G1/S cyclin Cig2p. In this article, we have studied the regulation of the Cdc2p/Cdc13p and Cdc2p/Cig2p complexes during synchronous meiosis. We observed that Cdc2p/Cig2p kinase is activated in an unexpected biphasic manner, first at onset of premeiotic S phase and again during meiotic nuclear divisions. The role of Cig2p during meiosis was investigated using cig2-deleted strains that exhibit delays in onset of both S phase and meiotic divisions as well as an inefficient completion of MII. Furthermore, analysis of cig2 transcripts revealed a meiosis-specific regulation of cig2 expression during MI/MII dependent upon the Mei4p transcription factor leading to a different transcription start site at this stage of meiosis.

    DOI: 10.1091/mbc.01-10-0507

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  • The G1/S cyclin Cig2p during meiosis in fission yeast

    A Borgne, H Murakami, J Ayte, P Nurse

    MOLECULAR BIOLOGY OF THE CELL   13 ( 6 )   2080 - 2090   2002.6

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    Cyclin-dependent kinases (CDKs) are important for both mitotic and meiotic cell cycles. In fission yeast, the major CDK, Cdc2p is involved in premeiotic DNA replication and in meiosis H. One of its partners, the mitotic cyclin Cdc13p is known to be required for meiosis, whereas there are no studies on the G1/S cyclin Cig2p. In this article, we have studied the regulation of the Cdc2p/Cdc13p and Cdc2p/Cig2p complexes during synchronous meiosis. We observed that Cdc2p/Cig2p kinase is activated in an unexpected biphasic manner, first at onset of premeiotic S phase and again during meiotic nuclear divisions. The role of Cig2p during meiosis was investigated using cig2-deleted strains that exhibit delays in onset of both S phase and meiotic divisions as well as an inefficient completion of MII. Furthermore, analysis of cig2 transcripts revealed a meiosis-specific regulation of cig2 expression during MI/MII dependent upon the Mei4p transcription factor leading to a different transcription start site at this stage of meiosis.

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  • Maintenance of replication forks and the S-phase checkpoint by Cdc18p and Orp1p

    H Murakami, SK Yanow, D Griffiths, M Nakanishi, P Nurse

    NATURE CELL BIOLOGY   4 ( 5 )   384 - 388   2002.5

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    S-phase and DNA damage checkpoint controls block the onset of mitosis when DNA is damaged or DNA replication is incomplete(1-3). It has been proposed that damaged or incompletely replicated DNA generates structures that are sensed by the checkpoint control pathway 4,5, although little is known about the structures and mechanisms involved. Here, we show that the DNA replication initiation proteins Orp1p(6,7) and Cdc18p(8,9) are required to induce and maintain the S-phase checkpoint in Schizosaccharomyces pombe. The presence of DNA replication structures correlates with activation of the Cds1p checkpoint protein kinase(10) and the S-phase checkpoint pathway. By contrast, induction of the DNA damage pathway is not dependent on Orp1p or Cdc18p. We propose that the presence of unresolved replication forks, together with Orp1p and Cdc18p, are necessary to activate the Cds1p-dependent S-phase checkpoint.

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  • Maintenance of replication forks and the S-phase checkpoint by Cdc18p and Orp1p

    H Murakami, SK Yanow, D Griffiths, M Nakanishi, P Nurse

    NATURE CELL BIOLOGY   4 ( 5 )   384 - 388   2002.5

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    S-phase and DNA damage checkpoint controls block the onset of mitosis when DNA is damaged or DNA replication is incomplete(1-3). It has been proposed that damaged or incompletely replicated DNA generates structures that are sensed by the checkpoint control pathway 4,5, although little is known about the structures and mechanisms involved. Here, we show that the DNA replication initiation proteins Orp1p(6,7) and Cdc18p(8,9) are required to induce and maintain the S-phase checkpoint in Schizosaccharomyces pombe. The presence of DNA replication structures correlates with activation of the Cds1p checkpoint protein kinase(10) and the S-phase checkpoint pathway. By contrast, induction of the DNA damage pathway is not dependent on Orp1p or Cdc18p. We propose that the presence of unresolved replication forks, together with Orp1p and Cdc18p, are necessary to activate the Cds1p-dependent S-phase checkpoint.

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  • Regulation of premeiotic S phase and recombination-related double-strand DNA breaks during meiosis in fission yeast

    H Murakami, P Nurse

    NATURE GENETICS   28 ( 3 )   290 - 293   2001.7

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    The meiotic cell cycle is characterized by high levels of recombination induced by DNA double-strand breaks (DSBs). which appear after completion of premeiotic S phase(1-5), leading to the view that initiation of recombination depends on meiotic DNA replication(6,7). It has also been indicated that DNA replication initiation proteins may differ between the meiotic and mitotic cell cycles, giving rise to an altered S phase, which could contribute to the high level of recombination during meiosis(8). We have investigated these possibilities in the fission yeast Schizosaccharomyces pombe and found that core DNA replication initiation proteins used during the mitotic cell cycle(9,0), including Cdc18p (budding yeast Cdc6p), Cdc19p (Mcm2p), Cdc21p (Mcm4p) and Orp1p (Orc1p), are also required for premeiotic S phase. Reduced activity of these proteins prevents completion of DNA replication but not formation of DSBs. We conclude that recombination-related DSB formation does not depend on the completion of meiotic DNA replication and we propose two parallel developmental sequences during the meiotic cell cycle: one for premeiotic S phase and the other for initiating recombination.

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  • Regulation of premeiotic S phase and recombination-related double-strand DNA breaks during meiosis in fission yeast

    H Murakami, P Nurse

    NATURE GENETICS   28 ( 3 )   290 - 293   2001.7

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    The meiotic cell cycle is characterized by high levels of recombination induced by DNA double-strand breaks (DSBs). which appear after completion of premeiotic S phase(1-5), leading to the view that initiation of recombination depends on meiotic DNA replication(6,7). It has also been indicated that DNA replication initiation proteins may differ between the meiotic and mitotic cell cycles, giving rise to an altered S phase, which could contribute to the high level of recombination during meiosis(8). We have investigated these possibilities in the fission yeast Schizosaccharomyces pombe and found that core DNA replication initiation proteins used during the mitotic cell cycle(9,0), including Cdc18p (budding yeast Cdc6p), Cdc19p (Mcm2p), Cdc21p (Mcm4p) and Orp1p (Orc1p), are also required for premeiotic S phase. Reduced activity of these proteins prevents completion of DNA replication but not formation of DSBs. We conclude that recombination-related DSB formation does not depend on the completion of meiotic DNA replication and we propose two parallel developmental sequences during the meiotic cell cycle: one for premeiotic S phase and the other for initiating recombination.

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  • DNA replication and damage checkpoints and meiotic cell cycle controls in the fission and budding yeasts

    H Murakami, P Nurse

    BIOCHEMICAL JOURNAL   349   1 - 12   2000.7

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    Language:English   Publishing type:Book review, literature introduction, etc.   Publisher:PORTLAND PRESS  

    The cell cycle checkpoint mechanisms ensure the order of cell cycle events to preserve genomic integrity. Among these, the DNA-replication and DNA-damage checkpoints prevent chromosome segregation when DNA replication is inhibited or DNA is damaged. Recent studies have identified an outline of the regulatory networks for both of these controls, which apparently operate in all eukaryotes. In addition, it appears that these checkpoints have two arrest points, one is just before entry into mitosis and the Other is prior to chromosome separation. The former point requires the central cell-cycle regulator Cdc2 kinase, whereas the latter involves several key regulators and substrates of the ubiquitin ligase called the anaphase promoting complex. Linkages between these cell-cycle regulators and several key checkpoint proteins are beginning to emerge. Recent findings on post-translational modifications and protein-protein interactions of the checkpoint proteins provide new insights into the checkpoint responses, although the functional significance of these biochemical properties often remains unclear. We have reviewed the molecular mechanisms acting at the DNA-replication and DNA-damage checkpoints in the fission yeast Schizosaccharomyces pombe, and the modifications of these controls during the meiotic cell cycle. We have made comparisons with the controls in fission yeast and other organisms, mainly the distantly related budding yeast.

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  • DNA replication and damage checkpoints and meiotic cell cycle controls in the fission and budding yeasts

    H Murakami, P Nurse

    BIOCHEMICAL JOURNAL   349 ( 1 )   1 - 12   2000.7

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    The cell cycle checkpoint mechanisms ensure the order of cell cycle events to preserve genomic integrity. Among these, the DNA-replication and DNA-damage checkpoints prevent chromosome segregation when DNA replication is inhibited or DNA is damaged. Recent studies have identified an outline of the regulatory networks for both of these controls, which apparently operate in all eukaryotes. In addition, it appears that these checkpoints have two arrest points, one is just before entry into mitosis and the Other is prior to chromosome separation. The former point requires the central cell-cycle regulator Cdc2 kinase, whereas the latter involves several key regulators and substrates of the ubiquitin ligase called the anaphase promoting complex. Linkages between these cell-cycle regulators and several key checkpoint proteins are beginning to emerge. Recent findings on post-translational modifications and protein-protein interactions of the checkpoint proteins provide new insights into the checkpoint responses, although the functional significance of these biochemical properties often remains unclear. We have reviewed the molecular mechanisms acting at the DNA-replication and DNA-damage checkpoints in the fission yeast Schizosaccharomyces pombe, and the modifications of these controls during the meiotic cell cycle. We have made comparisons with the controls in fission yeast and other organisms, mainly the distantly related budding yeast.

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  • Fission yeast Eso1p is required for establishing sister chromatid cohesion during S phase

    K Tanaka, T Yonekawa, Y Kawasaki, M Kai, K Furuya, M Iwasaki, H Murakami, M Yanagida, H Okayama

    MOLECULAR AND CELLULAR BIOLOGY   20 ( 10 )   3459 - 3469   2000.5

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    Sister chromatid cohesion is essential for cell viability. We have isolated a novel temperature-sensitive lethal mutant named eso1-H17 that displays spindle assembly checkpoint-dependent mitotic delay and abnormal chromosome segregation. At the permissive temperature, the eso1-H17 mutant shows mild sensitivity to UV irradiation and DNA-damaging chemicals. At the nonpermissive temperature, the mutant is arrested in M phase with a viability loss due to a failure to establish sister chromatid cohesion during S phase. The lethal M-phase arrest phenotype, however, is suppressed by inactivation of a spindle checkpoint. The eso1(+) gene is not essential for the onset and progression of DNA replication but has remarkable genetic interactions with those genes regulating the G(1)-S transition and DNA replication. The N-terminal two-thirds of Eso1p is highly homologous to DNA polymerase eta of budding yeast and humans, and the C-terminal one-third is homologous to budding yeast Eco1p (also called Ctf7p), which is required for the establishment of sister chromatid cohesion. Deletion analysis and determination of the mutation site reveal that the function of the Eco1p/Ctf7p-homologous domain is necessary and sufficient for sister chromatid cohesion. On the other hand, deletion of the DNA polymerase eta domain in Eso1p increases sensitivity to UV irradiation. These results indicate that Eso1p plays a dual role during DNA replication. The C-terminal region acts to establish sister chromatid cohesion, and the N-terminal region presumably catalyzes translesion DNA synthesis when template DNA contains lesions that block regular DNA replication.

    DOI: 10.1128/MCB.20.10.3459-3469.2000

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  • Fission yeast Eso1p is required for establishing sister chromatid cohesion during S phase

    K Tanaka, T Yonekawa, Y Kawasaki, M Kai, K Furuya, M Iwasaki, H Murakami, M Yanagida, H Okayama

    MOLECULAR AND CELLULAR BIOLOGY   20 ( 10 )   3459 - 3469   2000.5

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    Sister chromatid cohesion is essential for cell viability. We have isolated a novel temperature-sensitive lethal mutant named eso1-H17 that displays spindle assembly checkpoint-dependent mitotic delay and abnormal chromosome segregation. At the permissive temperature, the eso1-H17 mutant shows mild sensitivity to UV irradiation and DNA-damaging chemicals. At the nonpermissive temperature, the mutant is arrested in M phase with a viability loss due to a failure to establish sister chromatid cohesion during S phase. The lethal M-phase arrest phenotype, however, is suppressed by inactivation of a spindle checkpoint. The eso1(+) gene is not essential for the onset and progression of DNA replication but has remarkable genetic interactions with those genes regulating the G(1)-S transition and DNA replication. The N-terminal two-thirds of Eso1p is highly homologous to DNA polymerase eta of budding yeast and humans, and the C-terminal one-third is homologous to budding yeast Eco1p (also called Ctf7p), which is required for the establishment of sister chromatid cohesion. Deletion analysis and determination of the mutation site reveal that the function of the Eco1p/Ctf7p-homologous domain is necessary and sufficient for sister chromatid cohesion. On the other hand, deletion of the DNA polymerase eta domain in Eso1p increases sensitivity to UV irradiation. These results indicate that Eso1p plays a dual role during DNA replication. The C-terminal region acts to establish sister chromatid cohesion, and the N-terminal region presumably catalyzes translesion DNA synthesis when template DNA contains lesions that block regular DNA replication.

    DOI: 10.1128/MCB.20.10.3459-3469.2000

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  • Genetic studies with the fission yeast Schizosaccharomyces pombe suggest involvement of Wee1, Ppa2, and Rad24 in induction of cell cycle arrest by human immunodeficiency virus type 1 Vpr

    M Masuda, Y Nagai, N Oshima, K Tanaka, H Murakami, H Igarashi, H Okayama

    JOURNAL OF VIROLOGY   74 ( 6 )   2636 - 2646   2000.3

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    Accessory protein Vpr of human immunodeficiency virus type 1 (HIV-1) arrests cell cycling at G(2)/M phase in human and simian cells. Recently, it has been shown that Vpr also causes cell cycle arrest in the fission yeast Schizosaccharomyces pombe, which shares the cell cycle regulatory mechanisms with higher eukaryotes including humans. In this study, in order to identify host cellular factors involved in Vpr-induced cell cycle arrest, the ability of Vpr to cause elongated cellular morphology (cdc phenotype) typical of G(2)/M cell cycle arrest in wild-type and various mutant strains of S. pombe was examined, Our results indicated that Vpr caused the cde phenotype in wild-type S. pombe as well as in strains carrying mutations, such as the cdc2-3w, Delta cdc25, ran1-1, Delta chk1, Delta mik1, and Delta ppa1 strains. However, other mutants, such as the cdc2-1w, Delta wee1, Delta ppa2, and Delta rad24 strains, failed to show a distinct cdc phenotype in response to Vpr expression. Results of these genetic studies suggested that Wee1, Ppa2, and Rad24 might be required for induction of cell cycle arrest by HIV-I Vpr, Cell proliferation was inhibited by Vpr expression in all of the strains examined including the ones that did not show the cdc phenotype. The results supported the previously suggested possibility that Vpr affects the cell cycle and cell proliferation through different pathways.

    DOI: 10.1128/JVI.74.6.2636-2646.2000

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  • Genetic studies with the fission yeast Schizosaccharomyces pombe suggest involvement of Wee1, Ppa2, and Rad24 in induction of cell cycle arrest by human immunodeficiency virus type 1 Vpr

    M Masuda, Y Nagai, N Oshima, K Tanaka, H Murakami, H Igarashi, H Okayama

    JOURNAL OF VIROLOGY   74 ( 6 )   2636 - 2646   2000.3

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    Accessory protein Vpr of human immunodeficiency virus type 1 (HIV-1) arrests cell cycling at G(2)/M phase in human and simian cells. Recently, it has been shown that Vpr also causes cell cycle arrest in the fission yeast Schizosaccharomyces pombe, which shares the cell cycle regulatory mechanisms with higher eukaryotes including humans. In this study, in order to identify host cellular factors involved in Vpr-induced cell cycle arrest, the ability of Vpr to cause elongated cellular morphology (cdc phenotype) typical of G(2)/M cell cycle arrest in wild-type and various mutant strains of S. pombe was examined, Our results indicated that Vpr caused the cde phenotype in wild-type S. pombe as well as in strains carrying mutations, such as the cdc2-3w, Delta cdc25, ran1-1, Delta chk1, Delta mik1, and Delta ppa1 strains. However, other mutants, such as the cdc2-1w, Delta wee1, Delta ppa2, and Delta rad24 strains, failed to show a distinct cdc phenotype in response to Vpr expression. Results of these genetic studies suggested that Wee1, Ppa2, and Rad24 might be required for induction of cell cycle arrest by HIV-I Vpr, Cell proliferation was inhibited by Vpr expression in all of the strains examined including the ones that did not show the cdc phenotype. The results supported the previously suggested possibility that Vpr affects the cell cycle and cell proliferation through different pathways.

    DOI: 10.1128/JVI.74.6.2636-2646.2000

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  • Meiotic DNA replication checkpoint control in fission yeast

    H Murakami, P Nurse

    GENES & DEVELOPMENT   13 ( 19 )   2581 - 2593   1999.10

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    In eukaryotes, the DNA replication checkpoint prevents entry into mitosis when DNA replication is incomplete and is crucial for maintaining genomic integrity. Much less is known about equivalent controls that operate during meiosis. Here, we show that a DNA replication checkpoint control operates during meiosis in fission yeast. The mitotic checkpoint Rad genes and the Cds1 protein kinase are required for the DNA replication checkpoint during meiosis, with Cds1 playing a more prominent role than it does during mitosis. When DNA replication is blocked, the checkpoint maintains Cdc2 tyrosine 15 phosphorylation keeping Cdc2 protein kinase activity low and preventing onset of meiosis I. Additionally, there is a second checkpoint acting during meiosis that is revealed if cells are prevented from maintaining Cdc2 tyrosine 15 phosphorylation when DNA replication is blocked. Such cells arrest with high Cdc2 protein kinase activity and separated spindle pole bodies, an arrest state similar to that observed in mitotic budding yeast cells when DNA replication is incomplete. This second checkpoint is meiosis specific and may reflect processes occurring only during meiosis such as increased recombination rates, an extended duration of nuclear division, or homolog chromosome pairing.

    DOI: 10.1101/gad.13.19.2581

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  • A double-strand break repair component is essential for S phase completion in fission yeast cell cycling

    K Suto, A Nagata, H Murakami, H Okayama

    MOLECULAR BIOLOGY OF THE CELL   10 ( 10 )   3331 - 3343   1999.10

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    Fission yeast rad22(+), a homologue of budding yeast RAD52, encodes a double-strand break repair component, which is dispensable for proliferation. We, however, have recently obtained a cell division cycle mutant with a temperature-sensitive allele of rad22(+), designated rad22-H6, which resulted from a point mutation in the conserved coding sequence leading to one amino acid alteration. We have subsequently isolated rad22(+) and its novel homologue rti1(+) as multicopy suppressors of this mutant, rti1(+) suppresses all the defects of cells lacking rad22(+). Mating type switch-inactive heterothallic cells lacking either rad22(+) or rti1(+) are viable, but those lacking both genes are inviable and arrest proliferation with a cell division cycle phenotype. At the nonpermissive temperature, a synchronous culture of rad22-H6 cells performs DNA synthesis without delay and arrests with chromosomes seemingly intact and replication completed and with a high level of tyrosine-phosphorylated Cdc2. However, rad22-H6 cells show a typical S phase arrest phenotype if combined with the rad1-1 checkpoint mutation. rad22(+) genetically interacts with rad11(+), which encodes the large subunit of replication protein A. Deletion of rad22(+)/rti1(+) or the presence of rad22-H6 mutation decreases the restriction temperature of rad11-A1 cells by 4-6 degrees C and leads to cell cycle arrest with chromosomes incompletely replicated. Thus, in fission yeast a double-strand break repair component is required for a certain step of chromosome replication unlinked to repair, partly via interacting with replication protein A.

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  • A double-strand break repair component is essential for S phase completion in fission yeast cell cycling

    K Suto, A Nagata, H Murakami, H Okayama

    MOLECULAR BIOLOGY OF THE CELL   10 ( 10 )   3331 - 3343   1999.10

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    Fission yeast rad22(+), a homologue of budding yeast RAD52, encodes a double-strand break repair component, which is dispensable for proliferation. We, however, have recently obtained a cell division cycle mutant with a temperature-sensitive allele of rad22(+), designated rad22-H6, which resulted from a point mutation in the conserved coding sequence leading to one amino acid alteration. We have subsequently isolated rad22(+) and its novel homologue rti1(+) as multicopy suppressors of this mutant, rti1(+) suppresses all the defects of cells lacking rad22(+). Mating type switch-inactive heterothallic cells lacking either rad22(+) or rti1(+) are viable, but those lacking both genes are inviable and arrest proliferation with a cell division cycle phenotype. At the nonpermissive temperature, a synchronous culture of rad22-H6 cells performs DNA synthesis without delay and arrests with chromosomes seemingly intact and replication completed and with a high level of tyrosine-phosphorylated Cdc2. However, rad22-H6 cells show a typical S phase arrest phenotype if combined with the rad1-1 checkpoint mutation. rad22(+) genetically interacts with rad11(+), which encodes the large subunit of replication protein A. Deletion of rad22(+)/rti1(+) or the presence of rad22-H6 mutation decreases the restriction temperature of rad11-A1 cells by 4-6 degrees C and leads to cell cycle arrest with chromosomes incompletely replicated. Thus, in fission yeast a double-strand break repair component is required for a certain step of chromosome replication unlinked to repair, partly via interacting with replication protein A.

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  • Meiotic DNA replication checkpoint control in fission yeast

    H Murakami, P Nurse

    GENES & DEVELOPMENT   13 ( 19 )   2581 - 2593   1999.10

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    In eukaryotes, the DNA replication checkpoint prevents entry into mitosis when DNA replication is incomplete and is crucial for maintaining genomic integrity. Much less is known about equivalent controls that operate during meiosis. Here, we show that a DNA replication checkpoint control operates during meiosis in fission yeast. The mitotic checkpoint Rad genes and the Cds1 protein kinase are required for the DNA replication checkpoint during meiosis, with Cds1 playing a more prominent role than it does during mitosis. When DNA replication is blocked, the checkpoint maintains Cdc2 tyrosine 15 phosphorylation keeping Cdc2 protein kinase activity low and preventing onset of meiosis I. Additionally, there is a second checkpoint acting during meiosis that is revealed if cells are prevented from maintaining Cdc2 tyrosine 15 phosphorylation when DNA replication is blocked. Such cells arrest with high Cdc2 protein kinase activity and separated spindle pole bodies, an arrest state similar to that observed in mitotic budding yeast cells when DNA replication is incomplete. This second checkpoint is meiosis specific and may reflect processes occurring only during meiosis such as increased recombination rates, an extended duration of nuclear division, or homolog chromosome pairing.

    DOI: 10.1101/gad.13.19.2581

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  • Fission yeast Cdc24 is a replication factor C- and proliferating cell nuclear antigen-interacting factor essential for S-phase completion

    H Tanaka, K Tanaka, H Murakami, H Okayama

    MOLECULAR AND CELLULAR BIOLOGY   19 ( 2 )   1038 - 1048   1999.2

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    At the nonpermissive temperature the fission yeast cdc24-M38 mutant arrests in the cell cycle with incomplete DNA replication as indicated by pulsed-field gel electrophoresis. The cdc24(+) gene encodes a 501-amino-acid protein with no significant homolog to any known proteins. The temperature-sensitive cdc24 mutant is effectively rescued by pcn1(+), rfc1(+) (a fission yeast homologue of RFC1), and hhp1(+), which encode the proliferating cell nuclear antigen (PCNA), the large subunit of replication factor C (RFC), and a casein kinase I involved in DNA damage repair, respectively. The Cdc24 protein binds PCNA and RFC1 in vivo, and the domains essential for Cdc24 function and for RFC1 and PCNA binding colocalize in the N-terminal two-thirds of the molecule. In addition, cdc24(+) genetically interacts with the gene encoding the catalytic subunit of DNA polymerase epsilon, which is stimulated by PCNA. and RFC, and with those encoding the fission yeast counterparts of Mcm2, Mcm4, and Mcm10. These results indicate that Cdc24 is an RFC- and PCNA-interacting factor required for DNA replication and might serve as a target for regulation.

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  • Fission yeast Cdc24 is a replication factor C- and proliferating cell nuclear antigen-interacting factor essential for S-phase completion

    H Tanaka, K Tanaka, H Murakami, H Okayama

    MOLECULAR AND CELLULAR BIOLOGY   19 ( 2 )   1038 - 1048   1999.2

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    At the nonpermissive temperature the fission yeast cdc24-M38 mutant arrests in the cell cycle with incomplete DNA replication as indicated by pulsed-field gel electrophoresis. The cdc24(+) gene encodes a 501-amino-acid protein with no significant homolog to any known proteins. The temperature-sensitive cdc24 mutant is effectively rescued by pcn1(+), rfc1(+) (a fission yeast homologue of RFC1), and hhp1(+), which encode the proliferating cell nuclear antigen (PCNA), the large subunit of replication factor C (RFC), and a casein kinase I involved in DNA damage repair, respectively. The Cdc24 protein binds PCNA and RFC1 in vivo, and the domains essential for Cdc24 function and for RFC1 and PCNA binding colocalize in the N-terminal two-thirds of the molecule. In addition, cdc24(+) genetically interacts with the gene encoding the catalytic subunit of DNA polymerase epsilon, which is stimulated by PCNA. and RFC, and with those encoding the fission yeast counterparts of Mcm2, Mcm4, and Mcm10. These results indicate that Cdc24 is an RFC- and PCNA-interacting factor required for DNA replication and might serve as a target for regulation.

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  • A WD repeat protein controls the cell cycle and differentiation by negatively regulating Cdc2 B-type cyclin complexes

    S Yamaguchi, H Murakami, H Okayama

    MOLECULAR BIOLOGY OF THE CELL   8 ( 12 )   2475 - 2486   1997.12

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    In the fission yeast Schizosaccharomyces pombe, p34(cdc2) plays a central role controlling the cell cycle. We recently isolated a new gene named srw(1+), capable of encoding a WD repeat protein, as a multicopy suppressor of hyperactivated p34(cdc2). Cells lacking srw(1+) are sterile and defective in cell cycle controls. When starved for nitrogen source, they fail to effectively arrest in G(1) and die of accelerated mitotic catastrophe if regulation of p34(cdc2)/Cdc13 by inhibitory tyrosine phosphorylation is compromised by partial inactivation of Wee1 kinase. Fertility is restored to the disruptant by deletion of Cig2 B-type cyclin or slight inactivation of p34(cdc2). srw1(+) shares functional similarity with rum(1+), having abilities to induce endoreplication and restore fertility to rum1 disruptants. In the srw1 disruptant, Cdc13 fails to be degraded when cells are starved for nitrogen. We conclude that Srw1 controls differentiation and cell cycling at least by negatively regulating Cig2- and Cdc13-associated p34(cdc2) and that one of its roles is to down-regulate the level of the mitotic cyclin particularly in nitrogen-poor environments.

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  • A WD repeat protein controls the cell cycle and differentiation by negatively regulating Cdc2 B-type cyclin complexes

    S Yamaguchi, H Murakami, H Okayama

    MOLECULAR BIOLOGY OF THE CELL   8 ( 12 )   2475 - 2486   1997.12

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    In the fission yeast Schizosaccharomyces pombe, p34(cdc2) plays a central role controlling the cell cycle. We recently isolated a new gene named srw(1+), capable of encoding a WD repeat protein, as a multicopy suppressor of hyperactivated p34(cdc2). Cells lacking srw(1+) are sterile and defective in cell cycle controls. When starved for nitrogen source, they fail to effectively arrest in G(1) and die of accelerated mitotic catastrophe if regulation of p34(cdc2)/Cdc13 by inhibitory tyrosine phosphorylation is compromised by partial inactivation of Wee1 kinase. Fertility is restored to the disruptant by deletion of Cig2 B-type cyclin or slight inactivation of p34(cdc2). srw1(+) shares functional similarity with rum(1+), having abilities to induce endoreplication and restore fertility to rum1 disruptants. In the srw1 disruptant, Cdc13 fails to be degraded when cells are starved for nitrogen. We conclude that Srw1 controls differentiation and cell cycling at least by negatively regulating Cig2- and Cdc13-associated p34(cdc2) and that one of its roles is to down-regulate the level of the mitotic cyclin particularly in nitrogen-poor environments.

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  • Cell cycle checkpoint control

    H Murakami, H Okayama

    EXPERIMENTAL AND MOLECULAR MEDICINE   29 ( 1 )   1 - 11   1997.3

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    Language:English   Publishing type:Book review, literature introduction, etc.   Publisher:KOREAN SOC MED BIOCHEMISTRY MOLECULAR BIOLOGY  

    Genetic instability is considered to be a major driving force of malignancy of cancer cells, and at least some of cancer-associated genetic instability is known to be caused by defects in the cell cycle checkpoint control. Patients of the cancer-prone genetic disorder ataxia telangiectagia frequently develop malignant lymphoma and their cells are defective in gamma-irradiation responsive checkpoint control, whereas cells inactivated for the p53 recessive oncoprotein are defective in DNA damage-induced checkpoint control and develop genetic instability. Cells contain two major cell cycle checkpoint control systems: DNA-replication checkpoint, DNA-damage checkpoint. These checkpoint systems are thought to consist of three functionally distinct components: sensors, checkpoint signal transducers and cell cycle effecters. Recent rapid progress in the identification of these components is beginning to prove this conceptual model and the generality of the checkpoint system among eukaryotes. The full understanding of the cell cycle checkpoint control system will provide deeper insights into the highly complex mechanisms of carcinogenesis and highlight possible targets for cancer therapy.

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  • Cell cycle checkpoint control

    H Murakami, H Okayama

    EXPERIMENTAL AND MOLECULAR MEDICINE   29 ( 1 )   1 - 11   1997.3

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    Genetic instability is considered to be a major driving force of malignancy of cancer cells, and at least some of cancer-associated genetic instability is known to be caused by defects in the cell cycle checkpoint control. Patients of the cancer-prone genetic disorder ataxia telangiectagia frequently develop malignant lymphoma and their cells are defective in gamma-irradiation responsive checkpoint control, whereas cells inactivated for the p53 recessive oncoprotein are defective in DNA damage-induced checkpoint control and develop genetic instability. Cells contain two major cell cycle checkpoint control systems: DNA-replication checkpoint, DNA-damage checkpoint. These checkpoint systems are thought to consist of three functionally distinct components: sensors, checkpoint signal transducers and cell cycle effecters. Recent rapid progress in the identification of these components is beginning to prove this conceptual model and the generality of the checkpoint system among eukaryotes. The full understanding of the cell cycle checkpoint control system will provide deeper insights into the highly complex mechanisms of carcinogenesis and highlight possible targets for cancer therapy.

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  • Stress signal, mediated by a HOG1-like MAP kinase, controls sexual development in fission yeast

    T Kato, K Okazaki, H Murakami, S Stettler, PA Fantes, H Okayama

    FEBS LETTERS   378 ( 3 )   207 - 212   1996.1

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    We identified the phh1(+) gene that encodes a MAP kinase as the effector of Wis1 MAP kinase kinase in fission yeast, which is highly homologous with HOG1 of S. cerevisiae. Heterothalic phh1 dsiruptant is phenotypically indistinguishable from, wis1 deletion mutant, both displaying the same extent of partial sterility and enhanced sensitivity to a variety of stress, In phh1 disruptant, nitrogen starvation-induced expression of ste11(+), a key controller of sexual differentiation, is markedly diminished, Ectopic expression of ste11(+) effectively restores fertility, but not stress resistance, to the phh1 disruptant, These data show that stress signal, mediated by a MAP kinase, is required for efficient start of sexual differentiation.

    DOI: 10.1016/0014-5793(95)01442-X

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  • Stress signal, mediated by a HOG1-like MAP kinase, controls sexual development in fission yeast

    T Kato, K Okazaki, H Murakami, S Stettler, PA Fantes, H Okayama

    FEBS LETTERS   378 ( 3 )   207 - 212   1996.1

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    We identified the phh1(+) gene that encodes a MAP kinase as the effector of Wis1 MAP kinase kinase in fission yeast, which is highly homologous with HOG1 of S. cerevisiae. Heterothalic phh1 dsiruptant is phenotypically indistinguishable from, wis1 deletion mutant, both displaying the same extent of partial sterility and enhanced sensitivity to a variety of stress, In phh1 disruptant, nitrogen starvation-induced expression of ste11(+), a key controller of sexual differentiation, is markedly diminished, Ectopic expression of ste11(+) effectively restores fertility, but not stress resistance, to the phh1 disruptant, These data show that stress signal, mediated by a MAP kinase, is required for efficient start of sexual differentiation.

    DOI: 10.1016/0014-5793(95)01442-X

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  • Cell cycle control in fission yeast and mammals: Identification of new regulatory mechanisms

    H Okayama, A Nagata, S Jinno, H Murakami, K Tanaka, N Nakashima

    ADVANCES IN CANCER RESEARCH, VOL 69   69 ( 69 )   17 - 62   1996

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  • Cell cycle control in fission yeast and mammals: Identification of new regulatory mechanisms

    H Okayama, A Nagata, S Jinno, H Murakami, K Tanaka, N Nakashima

    ADVANCES IN CANCER RESEARCH, VOL 69   69   17 - 62   1996

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  • A KINASE FROM FISSION YEAST RESPONSIBLE FOR BLOCKING MITOSIS IN S-PHASE

    H MURAKAMI, H OKAYAMA

    NATURE   374 ( 6525 )   817 - 819   1995.4

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    IN virtually all eukaryotes, mitosis starts after the completion of DNA synthesis, This orderly process is ensured by the checkpoint mechanism that blocks:the onset of mitosis while DNA is being Synthesized or is damaged, In the fission yeast Schizosaccharomyces pombe, this mechanism involves some rad(+) and hus(+) genes(1-4). However, it is not known how the checkpoint system monitors these events, Recently a multicopy suppressor of a temperature-sensitive DNA polymerase-alpha mutant was isolated, This gene, named cds1(+) (checking DNA synthesis), encodes a typical protein kinase, Here we report that this protein kinase is a key component of the DNA replication-monitoring S/G2 checkpoint system, Our data suggest that its primary role is to monitor DNA synthesis by interacting: with DNA polymerase alpha and send a signal to block the onset of mitosis while DNA synthesis is in progress.

    DOI: 10.1038/374817a0

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  • A KINASE FROM FISSION YEAST RESPONSIBLE FOR BLOCKING MITOSIS IN S-PHASE

    H MURAKAMI, H OKAYAMA

    NATURE   374 ( 6525 )   817 - 819   1995.4

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    IN virtually all eukaryotes, mitosis starts after the completion of DNA synthesis, This orderly process is ensured by the checkpoint mechanism that blocks:the onset of mitosis while DNA is being Synthesized or is damaged, In the fission yeast Schizosaccharomyces pombe, this mechanism involves some rad(+) and hus(+) genes(1-4). However, it is not known how the checkpoint system monitors these events, Recently a multicopy suppressor of a temperature-sensitive DNA polymerase-alpha mutant was isolated, This gene, named cds1(+) (checking DNA synthesis), encodes a typical protein kinase, Here we report that this protein kinase is a key component of the DNA replication-monitoring S/G2 checkpoint system, Our data suggest that its primary role is to monitor DNA synthesis by interacting: with DNA polymerase alpha and send a signal to block the onset of mitosis while DNA synthesis is in progress.

    DOI: 10.1038/374817a0

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  • MONOCLONAL-ANTIBODY DETECTION OF PROLACTIN-BINDING SUBUNITS IN THE RABBIT MAMMARY-GLAND

    H MURAKAMI, F IKE, K KOHMOTO, S SAKAI

    BIOCHEMICAL JOURNAL   256 ( 3 )   917 - 922   1988.12

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  • MONOCLONAL-ANTIBODY DETECTION OF PROLACTIN-BINDING SUBUNITS IN THE RABBIT MAMMARY-GLAND

    H MURAKAMI, F IKE, K KOHMOTO, S SAKAI

    BIOCHEMICAL JOURNAL   256 ( 3 )   917 - 922   1988.12

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  • BINDING OF PROLACTIN AND MONOCLONAL-ANTIBODY TO PROLACTIN RECEPTORS IMMOBILIZED ON A NITROCELLULOSE MEMBRANE-FILTER

    S SAKAI, H MURAKAMI

    ANALYTICAL BIOCHEMISTRY   167 ( 2 )   406 - 410   1987.12

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    Language:English   Publisher:ACADEMIC PRESS INC JNL-COMP SUBSCRIPTIONS  

    DOI: 10.1016/0003-2697(87)90184-9

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  • BINDING OF PROLACTIN AND MONOCLONAL-ANTIBODY TO PROLACTIN RECEPTORS IMMOBILIZED ON A NITROCELLULOSE MEMBRANE-FILTER

    S SAKAI, H MURAKAMI

    ANALYTICAL BIOCHEMISTRY   167 ( 2 )   406 - 410   1987.12

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    DOI: 10.1016/0003-2697(87)90184-9

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Presentations

  • Meiotic DNA replication checkpoint linking pre-meiotic DNA replication and recombination

    Kosuge S, Yamada T, Aiba H, Murakami H

    Yeast Genetics and Molecular Biology News Japan  2017.9 

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  • Regulation of mei4+ expression during mitotic cell cycle in fission yeast

    Yuuki Akiya, Atsushi Ogihara, Hirofumi Aiba, Hiroshi Murakami

    9th International Fission yeast meeting,  2017.5 

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  • Regulation of mei4+ expression during mitotic cell cycle in fission yeast

    9th International Fission yeast meeting,  2017 

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  • Meiotic DNA replication checkpoint linking pre-meiotic DNA replication and recombination

    Yeast Genetics and Molecular Biology News Japan  2017 

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  • 分裂公募S.pombeの減数分裂期組換えに関わるHop1のHORMAドメインの機能解析

    炭谷悠人, 山田貴富, 太田邦史, 村上浩士

    第38回日本分子生物学会年会  2015.12 

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  • Regulation of wee1+ expression during meiosis in fission yeast,

    6th international fission yeast meeting,  2011.6 

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  • Role of CK2 on the cell cycle checkpoints in fission yeast

    BIT s 4th Annual Protein and Peptide Conference  2011.3 

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  • Role of CK2 on the cell cycle checkpoints in fission yeast

    BIT s 4th Annual Protein and Peptide Conference  2011 

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  • Regulation of wee1+ expression during meiosis in fission yeast,

    6th international fission yeast meeting,  2011 

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  • Role of CK2 on the cell cycle checkpoints in fission yeast

    6th International Conference on Protein Kinase CK2  2010.9 

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  • Role of CK2 on the cell cycle checkpoints in fission yeast

    6th International Conference on Protein Kinase CK2  2010 

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  • Casein kinase II is required for the spindle assembly checkpoint by regulating Mad2p in fission yeast.

    Shimada M, Yamamoto A, Murakami-Tonami Y, Nakanishi M, Yoshida T, AIba H

    5th International fission yeast meeting,  2009.10 

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  • Casein kinase II is required for the spindle assembly checkpoint by regulating Mad2p in fission yeast.

    5th International fission yeast meeting,  2009 

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  • Mei4p coordinates the onset of meiosis by negatively regulating wee1+ in fission yeast

    Murakami-Tonami Y

    2008.7 

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  • Mei4p coordinates the onset of meiosis by negatively regulating wee1+ in fission yeast

    2008 

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  • Cell cycle regulation by forkhead transcription factors in fission yeast,

    CRUK seminar  2006.3 

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  • Cell cycle regulation by forkhead transcription factors in fission yeast,

    CRUK seminar  2006 

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  • フォークヘッド型転写因子と細胞周期制御機

    Murakami H

    日本分子生物学会  2005.12 

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  • The mechanism of cell cycle arrest causes by mRNA splicing defects in fission yeast

    Shimada M, Nakanishi M

    3rd International fission yeast meeting  2004.8 

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  • The mechanism of cell cycle arrest causes by mRNA splicing defects in fission yeast

    3rd International fission yeast meeting  2004 

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  • 分裂酵母における減数分裂の細胞周期チェックポイント制御機構

    Murakami H

    医学会総会  2003.12 

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  • 細胞周期におけるチェックポイント制御機構

    村上浩士, 岡山博人

    第52回日本癌学会  1996.10 

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Works

  • 減数分裂の制御機構

    2014.4 -  

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  • アンチセンス鎖の分子機能解析

    2012.4 -  

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  • エピジェネティックスの変換機構

    2009.4 -  

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  • 減数分裂の制御機構

    2009.4 -  

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Research Projects

  • 抗がん剤のスクリーニング系の開発

    2013 -  

    遺伝子科学研究 

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    Grant type:Competitive

    分裂酵母を用いて、抗がん剤のスク リーニングをする。

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  • Molecular Mechanism of Mitotic Catastrophe

    Grant number:17390084  2005 - 2006

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)  NAGOYACITY UNIVERSITY

    NAKANISHI Makoto, MURAKMI Hiroshi, NIIDA Hiroyuki

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    Grant amount: \14600000 ( Direct Cost: \14600000 )

    Mitotic catastrophe has been first identified as a lethal phenotype with gross abnormalities of chromosome segregation during mitosis in some fission yeast mutant strains. Similar lethal phenotype was also observed in mammalian cells as a result from premature mitosis or failure to undergo complete mitosis. However, there is no broadly accepted definition of the term "mitotic catastrophe", presumably due to lack of the major processes dictating mitotic catastrophe in molecular and genetic terms. Mitotic catastrophe occurs as a result of uncoupling of the onset of mitosis from the completion of DNA replication, but how the ensuing lethality is regulated or what signals are involved is largely unknown. We demonstrate here the essential role of the ATM/ATR-Chk2-p53 pathway in the mitotic catastrophe observed in Chkl-deficient cells. Chk1 deficiency resulted in a premature onset of mitosis due to abnormal activation of cyclin B-Cdc2, and led to the activation of caspases 3 and 9 through cytoplasmic release of histone H1 and cytochrome c. Chkl-deficient cells were effectively rescued from lethality by the addition of caspase inhibitor. The Chkl deficiency resulted in foci formation of phosphorylated histone H2AX and the activation of Chk2, followed by an increase in the amount of p53 protein. Inhibition of ATM and ATR with caffeine also protected the lethality-prone Chkl-deficient cells. Chk2-deficient and p53-deficient cells were resistant to lethality from Chkl depletion. Our results therefore suggest that ATM/ATR-Chk2-p53 is required for mitotic catastrophe that eliminates cells escaping Chkl-dependent mitotic regulation. Loss of this function might be important in mammalian tumorigenesis.

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  • Cell cycle checkpoint control

    Grant number:17370072  2005 - 2006

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)  NAGOYA CITY UNIVERSITY

    MURAKAMI Hiroshi

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    Grant amount: \14600000 ( Direct Cost: \14600000 )

    During meiosis, high levels of recombination initiated by DNA double-strand breaks (DSBs) occur only after DNA replication. How DSB formation is coupled to DNA replication is unknown, however. We examined several DNA replication proteins for a role in this coupling in Schizosaccharomyces pombe and now show that ribonucleotide reductase (RNR), the rate-limiting enzyme of deoxyribonucleotide synthesis and the target of the DNA synthesis inhibitor hydroxyurea (HU), is indirectly required for DSB formation linked to DNA replication. In cells in which the function of the DNA replication checkpoint proteins Rad1p, Rad3p, Rad9p, Radl7p, Rad26p, Huslp, or Cdslp was compromised, however, DSB formation occurred at similar frequencies in the absence or presence of HU. The DSBs in the HU-treated mutant cells occurred at normal sites and were associated with recombination. We propose that the sequence of meiotic S phase and initiation of recombination is coordinated by DNA replication checkpoint proteins.
    The kinase Cdc2p is a central regulator of entry into and progression through nuclear division during mitosis and meiosis in eukaryotes. Cdc2p is activated at the onset of mitosis by dephosphorylation on tyrosine-15, the phosphorylation status of which is determined mainly by the kinase Weel p and the phosphatase Cdc25p. In fission yeast, the forkhead-type transcription factor Mei4p is required for expression of many genes during meiosis, with mei4 mutant cells arresting before meiosis I. The mechanism of cell cycle arrest in mei4 cells has remained unknown, however. We now show that cdc25+ is an important target of Mei4p in control of entry into meiosis I. Forced dephosphorylation of Cdc2p on tyrosine-15 thus induced meiosis I in mei4 mutant cells without a delay, although no spores were formed. We propose that Mei4p acts as a rate-limiting regulator of meiosis I by activating cdc25+ transcription in coordination with other meiotic events.

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  • RNAの異常をモニターする細胞周期制御機構

    Grant number:17026032  2005 - 2006

    日本学術振興会  科学研究費助成事業  特定領域研究  名古屋市立大学

    村上 浩士

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    Grant amount: \5600000 ( Direct Cost: \5600000 )

    多くの生物でRNAスプライシングに異常が生じると細胞周期のG2期に停止することが知られている。さらに、イントロンを分解する酵素が失活した場合もG2期からM期への進行に大きな障害が生じることも明らかにされている。しかし、どのような機構で細胞周期が停止しているのか明らかにされていなかった。そこで、分裂酵母を用い、RNAスプライシング変異株において細胞周期が停止しない変異株をスクリーニングし、数種類の変異株を得た。その原因遺伝子を同定したところ、カゼインキナーゼ2,wee1とrad24であった。BタイプサイクリンであるCdc13を過剰発現させても細胞周期を進行させることができた。すなわち、RNAスプライシングに異常が生じてもCdc2キナーゼが活性化されればG2期停止を解除させることができた。しかし、既知のDNA損傷のチェックポイント機能が失われてもRNAスプライシング変異株の細胞周期は停止したままであった。これはRNA転写後調節と細胞周期の連携が新しいチェックポイント機構により制御されている重要な手がかりであると考えられる。また、スプライシング異常によりCdc13タンパク質の量が低下していたことから、Cdc13タンパク質の量の調節がこの細胞周期制御機構の重要な制御機構になっていると考えられる。

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  • DNA複製と損傷をモニターする細胞周期制御機構

    Grant number:17013075  2005    

    日本学術振興会  科学研究費助成事業  特定領域研究  名古屋市立大学

    村上 浩士

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    Grant amount: \7600000 ( Direct Cost: \7600000 )

    申請者は最近、スピンドルチェックポイントにおいて中心的な役割を果たしている分裂酵母のMad2がDNA複製チェックポイントに関与していることを見つけた。Chk1のリン酸化を指標にするとMad2はChk1の下流もしくは、独立にCdc2の制御をしている可能性が見いだされた.現在、さらにMad2の制御機構について解析中である.
    また、RNAスプライシング変異による細胞周期停止に必須な因子として単離したカゼインキナーゼ2(CK2)の変異株は、微小管変異によるmetaphaseからanaphaseへの遅延があまりみられないというスピンドルチェックポイント異常を示した。また、CK2のサブユニットをコードする遺伝子の変異株はスピンドルの形成を阻害する薬剤に対して感受性を示した.このことより、CK2はスピンドルチェックポイントに関与している可能性があるので、その制御機構について現在、さらに解析中である.
    フォークヘッド型転写因子は高等動物ではすでに50以上存在することが知られ、発生、分化や癌化などに関与しているといわれている.分裂酵母には4つフォークヘッド型転写因子が存在し、その中のFkh2とfhl1が接合に関与していることを見いだした.fhk2破壊株やfkh2 fhl1破壊株では接合に必須の転写因子ste11の発現が低下していた。fkh2破壊株やfkh2 fhl1破壊株でste11を過剰発現すると接合が回復したので、これらの変異株での接合率低下はste11の発現低下によると考えられる.現在、fkh2やfhl1の作用機構を解析中である。

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  • 減数分裂における細胞周期制御機構

    Grant number:16026238  2004 - 2005

    日本学術振興会  科学研究費助成事業  特定領域研究  名古屋市立大学

    村上 浩士

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    Grant amount: \3700000 ( Direct Cost: \3700000 )

    細胞周期の制御機構は遺伝情報を安定して維持するために必須の役割を果たしている。また、この制御機構は酵母からヒトに至るまで非常に保存された機構であることも知られている。体細胞分裂の細胞周期制御は少しずつ明らかになっているが、減数分裂ではほとんど未解明である。減数分裂での細胞周期制御で重要な問題はDNA複製と遺伝子組み換え開始のための二重鎖切断がどのように制御されているかほとんど未解明なことである。申請者は減数分裂のDNA合成と二重鎖切断の両方に必要な因子をスクリーニングした結果、リボヌクレオチドリダクターゼ(RNR)を同定した。すなわちRNRを阻害するとDNA合成も二重鎖切断も起こらなくなる。しかし、RNRを阻害した状態でも、DNA複製チェックポイントタンパク質(Rad1,Rad3,Rad9,Rad17,Rad26,Hus1,Cds1)が機能を失うと、二重鎖切断がかなりの頻度で起こることが明らかになった。また、この時の二重鎖切断は正常な場合と同じ位置に生じ、組み換え開始に必要な因子を必要とした。さらに、DNA複製チェックポイントタンパク質は細胞周期制御因子であるCdkをコントロールしていることが知られているが、この経路には必要がないことから新しい因子がチェックポイント因子のターゲットになっていることを明らかにした。すなわち、RNRが阻害されると、DNA複製が阻害されるだけでなく、チェックポイント因子を活性化し、二重鎖切断の開始を抑制するという新しいチェックポイント経路が減数分裂に存在することが明らかになった。

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  • Cell cycle checkpoint control

    Grant number:15370089  2003 - 2004

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)  NAGOYA CITY UNIVERSITY

    MURAKAMI Hiroshi

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    Grant amount: \15500000 ( Direct Cost: \15500000 )

    During meiosis, high levels of recombination initiated by DNA double-strand breaks (DSBs) occur only after DNA replication. How DSB formation is coupled to DNA replication is unknown, however. We examined several DNA replication proteins for a role in this coupling in Schizosaccharomyces pombe and now show that ribonucleotide reductase (RNR), the rate-limiting enzyme of deoxyribonucleotide synthesis and the target of the DNA synthesis inhibitor hydroxyurea (HU), is indirectly required for DSB formation linked to DNA replication. In cells in which the function of the DNA replication checkpoint proteins Rad1p, Rad3p, Rad9p, Rad17p, Rad26p, Hus1p, or Cdslp was compromised, however, DSB formation occurred at similar frequencies in the absence or presence of HU. The DSBs in the HU-treated mutant cells occurred at normal sites and were associated with recombination. In addition, Cdc2p is apparently not involved in this process. We propose that the sequence of meiotic S phase and initiation of recombination is coordinated by DNA replication checkpoint proteins.

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  • Analysis of meiotic DNAdamage checkpoint

    Grant number:14370518  2002 - 2004

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)  NAGOYA CITY UNIVERSITY

    HAYASHI Yutaro, HASHIMOTO Yoshihiro, MURAKAMI Hiroshi, NAKANISHI Makoto, KOHRI Kenjiro

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    Grant amount: \4700000 ( Direct Cost: \4700000 )

    Molecular mechanism in human meiosis is still unknown as no effective methods are established to analyze. We examined checkpoint system to DNA damage during fission yeast meiosis.
    In vegetative cdsl cells, checkpoint Rad (Rad1, Rad3 etc.) dependent activation of Chk1 in response to hydroxyurea(HU) arrest the cell cycle in G2. But Chk1 dependent response to HU during meiosis is attenuated. To investigate the existence of meiotic DNA damage checkpoint system, rad1, chk1, cds1 mutants are treated with alkylating agent methylmethane sulfonate(MMS; 0.01%) during early meiosis. These mutants undergo aberrant chromosomal segregation, delayed and abnormal meiotic divisions at s similar rate to wild type. In meiotic cds1 cells with MMS, subtle phosphorylation in Chk1 protein is observed in immunoblot, compared to the vegetative cells. Cdc2-Tyr15 in meiotic S phase is also dephosphorylated. The DNA damage response of checkpoint mutants to MMS in this study suggests DNA damage checkpoint in fission yeast meiosis is attenuated or not in existence.
    Recently, other groups have demonstrated that spontaneous S phase damage is repaired by activating recombination without checkpoint arrest. It is not shown whether the checkpoint aberration causes meiotic abnormality in human. As some genes related to the DNA recombination have already identified in human, it would be significant to examine the genes to know the molecular mechanism in meiosis.

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  • DNA合成と二重鎖切断を連携する細胞周期制御機構

    Grant number:15023250  2003    

    日本学術振興会  科学研究費助成事業  特定領域研究  名古屋市立大学

    村上 浩士

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    Grant amount: \6200000 ( Direct Cost: \6200000 )

    現在知られているすべての真核生物において、減数分裂ではDNA複製が完了した後に遺伝子組み換えのための二重鎖切断が生じると考えられている。出芽酵母ではこの過程は直接カップリングしていることが知られている。本研究において、分裂酵母でこの過程を詳しく調べてみた。DNA合成阻害剤であるヒドロキシレア(HU)で処理すると、DNA複製が阻害されるだけでなく、二重鎖切断も阻害された。しかし、DNA複製後にHUを加えても二重鎖切断は阻害されなかった。このことより、HUは直接二重鎖切断の形成を阻害しているのではなく、DNA複製を介して二重鎖切断を抑制していると考えられる。すなわち、DNA複製と二重鎖切断は独立した現象で、チェックポイント因子により制御されていることが示唆される。そこで、DNA複製と二重鎖切断をカップリングさせているような因子をスクリーニングしたところ、Rad1,Rad3,Rad9,Rad17,Rad26,Hus1,Cds1がこの制御に必要であることが明らかになった。さらに、これらの変異株でみられる二重鎖切断は正常な場合と同じ位置に観察された。以上のことから、DNA複製と二重鎖切断は独立した現象で、チェックポイント因子により制御されていると考えられる。このチェックポイントはいかなる生物でも未同定の新しい経路であると思われる。また、このような因子のホモログはヒトにおいても存在し、DNA複製や損傷のチェックポイント機能があると考えられている。従って、この研究により、チェックポイント因子がヒトを含む高等動物の減数分裂におけるDNA複製と遺伝子組み換えのカップリングにも関与していることが推察された。

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  • 減数分裂における細胞周期チェックポイント制御機構

    Grant number:14033241  2002 - 2003

    日本学術振興会  科学研究費助成事業  特定領域研究  名古屋市立大学

    村上 浩士

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    Grant amount: \4800000 ( Direct Cost: \4800000 )

    現在知られているすべての真核生物において、減数分裂ではDNA複製が完了した後に遺伝子組み換えのための二重鎖切断が生じると考えられている。出芽酵母ではこの過程は直接カップリングしていることが知られている。本研究において、分裂酵母でこの過程を詳しく調べてみた。DNA合成阻害剤であるヒドロキシレア(HU)で処理すると、DNA複製が阻害されるだけでなく、二重鎖切断も阻害された。しかし、DNA複製後にHUを加えても二重鎖切断は阻害されなかった。このことより、HUは直接二重鎖切断の形成を阻害しているのではなく、DNA複製を介して二重鎖切断を抑制していると考えられる。すなわち、DNA複製と二重鎖切断は独立した現象で、チェックポイント因子により制御されていることが示唆される。そこで、DNA複製と二重鎖切断をカップリングさせているような因子をスクリーニングしたところ、Rad1,Rad3,Rad9,Rad17,Rad26,Hus1,Cds1がこの制御に必要であることが明らかになった。さらに、これらの変異株でみられる二重鎖切断は正常な場合と同じ位置に観察された。以上のことから、DNA複製と二重鎖切断は独立した現象で、チェックポイント因子により制御されていると考えられる。このチェックポイントはいかなる生物でも未同定の新しい経路であると思われる。また、このような因子のホモログはヒトにおいても存在し、DNA複製や損傷のチェックポイント機能があると考えられている。従って、この研究により、チェックポイント因子がヒトを含む高等動物の減数分裂におけるDNA複製と遺伝子組み換えのカップリングにも関与していることが推察された。

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  • DNA二重鎖切断をモニターする細胞周期制御機構

    Grant number:14026044  2002    

    日本学術振興会  科学研究費助成事業  特定領域研究  名古屋市立大学

    村上 浩士

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    Grant amount: \5200000 ( Direct Cost: \5200000 )

    ほとんどすべての真核生物において、減数分裂ではDNA複製が完了した後に遺伝子組み換えのための二重鎖切断が生じることが知られている。出芽酵母ではこの過程は直接カップリングしていることが知られている。本研究において、分裂酵母でこの過程を詳しく調べてみた。DNA合成阻害剤であるヒドロキシレア(HU)で処理すると、DNA複製が阻害されるだけでなく、二重鎖切断も阻害された。しかし、DNA複製後にHUを加えても二重鎖切断は阻害されなかった。このことより、HUは直接二重鎖切断の形成を阻害しているのではなく、DNA複製を介して二重鎖切断を抑制していると考えられる。すなわち、DNA複製と二重鎖切断は独立した現象で、チェックポイント因子により制御されていることが示唆される。そこで、DNA複製と二重鎖切断をカップリングさせているような因子をスクリーニングしたところ、Rad1,Rad3,Rad9,Rad17,Rad26,Hus1,Cds1がこの制御に必要であることが明らかになった。さらに、これらの変異株でみられる二重鎖切断は正常な場合と同じ位置に観察された。以上のことから、DNA複製と二重鎖切断は独立した現象で、チェックポイント因子により制御されていると考えられる。このチェックポイントはいかなる生物でも未同定の新しい経路であると思われる。また、このような因子のホモログはヒトにおいても存在し、DNA複製や損傷のチェックポイント機能があると考えられている。この研究により、このようなチェックポイント因子がヒトを含む高等動物の減数分裂におけるDNA複製と遺伝子組み換えのカップリングにも関与していることが示唆された。

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  • 細胞周期のチェックポイントの機構

    Grant number:08670137  1996 - 1998

    日本学術振興会  科学研究費助成事業  基盤研究(C)  東京大学

    村上 浩士, 永田 昭久, 岡山 博人

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    Grant amount: \1900000 ( Direct Cost: \1900000 )

    細胞周期のチェックポイント機構を解明するため、新しい遺伝子の単離や新たなチェックポイント機構の解明につながる解析を分裂酵母をモデル生物として行ってきた。
    まず、細胞周期のDNA合成期にチェックポイント機構を発揮するcds1遺伝子の下流で働くと思われる変異株の単離に成功した。まだ、原因遺伝子のクローニングは行っていないが、新たな機能を有する遺伝子である可能性が高い。
    次に、cds1遺伝子破壊株のDNA合成阻害剤感受性をマルチコピーで回復する遺伝子のスクリーニングを行った結果、分裂酵母のrad25遺伝子とsuc22遺伝子を単離した。
    新たなチェックポイント制御因子を単離する目的で、M期に強制的に進入する変異株を抑圧する遺伝子のスクリーニングを行った結果、分裂酵母のste9遺伝子を単離した。この遺伝子の破壊株の機能解析から、細胞周期全体を制御するcdc2キナーゼのG1期における阻害因子であることが判明した。このことより、分化と細胞周期を結ぶチェックポイント機構の存在が示唆された。
    DNA損傷のチェックポイントシグナルがどの段階で発信されているかは、現在まで大きな謎であった。抗がん剤を用いた解析から、分裂酵母の除去修復酵素からそのシグナルが発信されていることを明らかにした。
    高等動物のcds1ホモログ遺伝子の探索は機能相補スクリーニングや、構造を利用したPCR法を用いて行っているが未だ成功してはいない。

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  • Specific control of cell cycle entry by tyrosine phosphorylation of Cdk4

    Grant number:08670139  1996 - 1997

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)  University of Tokyo

    JINNO Shigeki, MURAKAMI Hiroshi, NAGATA Akihisa, OKAYAMA Hiroto

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    Grant amount: \2200000 ( Direct Cost: \2200000 )

    In higher eukaryote, a majority of cells are arrested in a quiescent state. The G0-G1 transition is important because G0 arrested cells must enter G1 phase of the cell cycle when they work. Recently we Rreported That Cdk4 is inactivated by phosphorylation on tyrosine 17 and that this inactivation is required for UV irradiation induced G1 checkpoint arrest. Here we show that this Cdk4 phosphorylation occurs only in a quiescent state and dephosphorylation during their cell cycle entry. In the cells traversing G1, Cdk4 is not tyrosine-phosphorylated. Ultraviolet irradiation blocks dephosphorylation, thereby preventing the "start" of the cell cycle. Exponentially growing cells are not able to arrestin G1 upon UV irradiation, because Cdk4 is not phosphory lated. We conclude that tyrosine phosphorylation of Cdk4 is specifically used for the control of the G0-G1 transition and constitutes a major DNA damage-responsive checkpoint mechanism during this transition.

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  • Development of methods for using fission yeast as a test tube for analyzing highly complex biological systems.

    Grant number:07557196  1995 - 1997

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (A)  The University of Tokyo

    OKAYAMA Hiroto, JINNO Shigeki, NAGATA Akihisa

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    Grant amount: \4300000 ( Direct Cost: \4300000 )

    During this research term, we have focused on the identification of new elements regulating onset of differentiation of fission yeast and isolated 4 such elements playing key roles regulating the onset of differentiation and switching growth and differentiation. One is phhl^+ encoding a stress MAP kinase highly homologous with mammalian p38. Analysis shows that phhl is required for nutrient starvation-invokes induction of Ste11, a key transcriptional factor essential for the onset of differentiation, providing a molecular basis for the promotion of differentiation by stress. The second is rcdl^+ whose structural homologues are present at least in budding yeast, plant, nematodes and humans. rcdl^+ is essential for nitrogen starvation-invoked differentiation and Ste11 induction. The human homologue of rcdl^+ is expressed abundantly in tests, ovary, spleen and thymus, where cell proliferation and differentiation are actively taking place. The third is nrdl^+ encoding a typical RNA binding protein. Analysis shows that the biological role of this gene is to inhibit differentiation by repressing Ste11-regulated genes essential for conjugation and/or meiosis until cells reach a critical point of starvation. We also isolated rat and human homologues of nrdl^+ by expression cloning using fission yeast as host. They are named ROD1. As far as assayd in fission yeast, ROD1 is functionally indistinguishable from nrdl^+. Overexpression of ROD1 in a human hematopietic cell line effectively blocks its differentiation to megakaryocytes.
    The fourth is srwl^+ encoding a WD repeat protein. Cells lacking this gene are unable to start differentiation, poor to arrestin G1 and defectivein G2 control. The inability to start differentiation is suppressed by deletion of the cig2 cyclin gene, which we previously identified as a negative regulator of differentiation. Analysis shows that srwl^+ is essential for nutrient starvation-induced degradation of the Cdc13 mitotic cyclin. Thus, srwl^+ is a key factor switching between cell proliferation and differentiation.

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  • DNA損傷と合成をモニターするチェックポイント機構

    Grant number:08280206  1996    

    日本学術振興会  科学研究費助成事業  重点領域研究  東京大学

    村上 浩士, 岡山 博人

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    Grant amount: \1800000 ( Direct Cost: \1800000 )

    DNA損傷と合成をモニターするチェックポイント機構を解明するため、新しい遺伝子の単離や新たなチェックポイント機構の解明につながる解析を分裂酵母をモデルとして行ってきた。
    まず、細胞周期のDNA合成期にチェックポイント機能を発揮するcds1遺伝子の下流で働くと思われる分裂酵母の変異株の単離に成功した。まだ、原因遺伝子のクローニングは行っていないが、新たな機能を有する遺伝子である可能性が高い。
    次に、cds1遺伝子破壊株のDNA合成阻害剤感受性をマルチコピーで回復する遺伝子のスクリーニングを行った結果、分裂酵母のrad25遺伝子とsuc22遺伝子を単離した。
    DNA損傷のチェックポイントシグナルがどの段階で発信されているかは、現在まで大きな謎であった。抗がん剤を用いた解析から、分裂酵母の除去修復酵素からそのシグナルが発信されていることを明らかにした。
    新たなチェックポイント制御因子を単離する目的で、M期に強制的に進入する変異株を抑圧する遺伝子のスクリーニングを行った結果、分裂酵母のste9遺伝子を単離した。この遺伝子の破壊株の機能解析から、細胞周期全体を制御するcdc2キナーゼのG1期における阻害因子であることが判明した。このことより、分化と細胞周期を結ぶチェックポイント機構の存在が示唆された。
    高等動物のcds1ホモログ遺伝子の探索は機能相補スクリーニングや、構造を利用したPCR法を用いて行っているが未だ成功してはいない。

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  • 染色体複製開始と進行をモニターするチェックポイント機構

    Grant number:08277203  1996    

    日本学術振興会  科学研究費助成事業  重点領域研究  東京大学

    村上 浩士, 岡山 博人

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    Grant amount: \2000000 ( Direct Cost: \2000000 )

    染色体複製開始と進行をモニターするチェックポイント機構を解明するため、新しい遺伝子の単離や新たなチェックポイント機構の解明につながる解析を分裂酵母をモデル生物として行ってきた。
    まず、細胞周期のDNA合成期にチェックポイント機能を発揮するcds1遺伝子の下流で働くと思われる分裂酵母の変異株の単離に成功した。まだ、原因遺伝子のクローニングは行っていないが、新たな機能を有する遺伝子である可能性が高い。
    次に、cds1遺伝子破壊株のDNA合成阻害剤感受性をマルチコピーで回復する遺伝子のスクリーニングを行った結果、rad25遺伝子とsuc22遺伝子を単離した。
    DNA損傷のチェックポイントシグナルがどの段階で発信されているかは、現在まで大きな謎であった。抗がん剤を用いた解析から、分裂酵母の除去修復酵素からそのシグナルが発信されていることを明らかにした。
    新たなチェックポイント制御因子を単離する目的で、M期に強制的に進入する変異株を抑圧する遺伝子のスクリーニングを行った結果、ste9遺伝子を単離した。この遺伝子の破壊株の機能解析から、細胞周期全体を制御するcdc2キナーゼのG1期における阻害因子であることが判明した。このことより、分化と細胞周期を結ぶチェックポイント機構の存在が示唆された。
    高等動物のcds1ホモログ遺伝子の探索は機能相補スクリーニングや、構造を利用したPCR法を用いて行っているが未だ成功してはいない。

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  • Switch mechanism between mitotic growth and cell differentiation

    Grant number:07457028  1995 - 1996

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)  The University of Tokyo

    NAGATA Akihisa, MURAKAMI Hiroshi, JINNO Shigeki, OKAYAMA Hiroto

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    Grant amount: \6900000 ( Direct Cost: \6900000 )

    In the fission yeast S.Pombe, switching from mitotic growth to sexual development is regulated by a highly complex mechanism. To isolate new genes involved in this switch mechanism, we have searched for multicopy suppressors of a patl-114^<ts> mutant, and identified three genes named rvs1^+, Igs69^+ and nrd1^+.
    rsv1 (Required for Stationary phase Viability) is essential for fission yeast cell viability in a stationary induced by glucose starvation. rsv1^+ encodes a 47kD protein with two zinc finger motifs that show limitid homology with the Aspergillus Nidulans CREA,the budding yeast MIG1 and the mammalian Egr-1/NGF1-A genes. Cells deleted for rsv1^+ are unable to survive glucose starvation. Transcription of rsv1 is negatively regulated by the cAMP pathway and induced during glucose starvation. Viavility loss of the cells with the constitutively activated cAMP during entry into stationary phase is largely attributavle to poor induction of rsv1^+. Analysis also shows that cells need to receive starvation signals before entry into the stationary phase in order to maintain viavility in a glucose poor environment.
    Igs69^+ encodes a 70kD protein with two zinc finger motifs like rsv1^+. Cells deleted for Igs69^+ are viable but grow slowly. It may be trouble with the cell separation.
    nrd1^+ encodes a 52kD protein with four repeats of the RNA binding motif composed of two highly conserved amino acid sequences, RNP1 and RNP2. Cells deleted for nrd1^+ are viable and grow at a normal growth rate, but are markedly enhanced in conjugation in the presence of a plenty of nitrogen. Overexpression of nrd1^+ inhibits mating. In a close correlation with enhancement of mating, in ned1^+ cells, the basal level of ste11^+ expression is markedly elevated. nrd1^+ mRNA diminishes during nitrogen stavation. nrd1^+ rescues patl-114 cyc17^- double mutants. Conversely, res1^+, cyc17^+ or pka1^+ can rescue patl-114 nrd1^- cells. Thus, nrd1^+ is a key negative regulator of sexual differentiation, and its principal function is likely to be repression of ste11^+.
    Moreover, we have isolated Rod1 gene, a rat homolog of fission yeast nrd1^+. Rod1 encodes a 57kD protein with with four repeats of the RNA binding motif cpmposed of two highly conserved amino acid sequences, RNP1 and RNP2 like nrd^+. Rodl can substitute for nrd1^+ in S.pombe cell. This suggest that the differentiation regulatory mechanism is conserved evolutionarily.

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  • Eukaryotic Cell Cycle Control

    Grant number:06404020  1994 - 1996

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (A)  The University of Tokyo

    OKAYAMA Hiroto, MURAKAMI Hiroshi, JINNO Shigeki, NAGATA Akihisa

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    Grant amount: \25500000 ( Direct Cost: \25500000 )

    The goal of this research is to understand the molecular mechanism controlling the cell cycle "start" and the cell differentiation "start". To this end, fission yeast has been studied as a model organism because this organism is closely related to higher eukaryotes. During the past 3 years, we have discovered 4 novel factors controlling the onset of differentiation and 5 new factors controlling the cell cycle "start". Among the 4 factors are a B-type cyclin that negatively controls the onset of differentiation and positively controls the start of the cell cycle ; a stress signal MAP kinase called Phh1 that positively controls the onset of differentiation ; a novel protein named Rcd1 that is essential for nitrogen-starvation-induced start of differentiation ; Nrd1, a RNA binding protein that negatively controls the onset of differentiation. They have mammalian homologues, raising the possibility that the differentiation control system found in fission yeast may be conserved up to mammals.
    Among the 5 cell cycle "start" factors are Res2, a DNA binding subunit that forms a transcriptional factor complex with Cdc10 ; Rep1 and Rep2, two transcriptional activator subunits that act by forming a complex with Res2-Cdc10 ; the new cyclin Pas1 that associates with Cdc2 kinase and activates Res2/Cdc10/Rep2 ; Spt1 a novel factor that binds Cdc18 and critically controls the onset and progression of S phase. Spt1 might form a control cascade independent of the Cdc2/Pas1-Res/Cdc10/Rep-Cdc18 cascade.

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  • DNA合成と損傷をモニターするチェックポイント機構

    Grant number:07255202  1995    

    日本学術振興会  科学研究費助成事業  重点領域研究  東京大学

    村上 浩士, 岡山 博人

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    Grant amount: \1500000 ( Direct Cost: \1500000 )

    チェックポイント機構とは細胞周期を順序正しく進行することを保証する機構である。たとえば、真核生物にはDNA合成が完了するまでM期に進ませないという機構が存在している。また、DNAに損傷がおこると、損傷を修復するまで細胞周期を停止させるという機構も存在する。
    分裂酵母では、細胞周期を進行するのに必須な遺伝子と、細胞周期を順序正しく保つのに必須な遺伝子(チェックポイント遺伝子)が存在することが知られている。しかし、どのようにDNAが合成しているのかを検知し、そのシグナルがどのように細胞分裂を制御しているcdc2キナーゼに伝達しているのかは全くわかっていない。
    我々はDNAポリメラーゼαの温度感受性変異株を樹立し、これがチェックポイント機構に関与していることを明らかにした。次に、この株を宿主として新しいプロテインキナーゼ(cds1^+)をクローニングした。いろいろな解析の結果CdslキナーゼはDNAポリメラーゼαと結合し、DNA合成をモニターし、そのシグナルをcdc2キナーゼに伝達する機能を持つと結論した。
    この研究よりDNA複製装置とチェックポイント遺伝子のつながりがはじめて明らかになった。また、cds1^+は非常に特異的に機能することが明らかになり、新しいチェックポイント遺伝子であることが解明された。

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  • 細胞周期と分化の制御機構

    1990 -  

    遺伝子科学研究 

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    Grant type:Competitive

    分裂酵母を使って、細胞がどのようにDNAを複製し、染色体を分配して細胞分裂を行っている のか、分化はどのようにしておこるのか、遺伝子発現はどのように調節されているのか、減数分裂はどうな っているのかを解明する。

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  • 分裂酵母における細胞周期、遺伝子発現、分化および減数分裂制御

    1986 -  

    遺伝子科学研究 

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    Grant type:Competitive

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  • Regulations of cell cycle, gene expression, sexual differentiation and meiosis

    1986 -  

    Gene Science Research 

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    Grant type:Competitive

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